| 1 | M | M:82.4% | | | 1 |
| 2 | G | G:83.5% | Matrix protein p17 | | 11 |
| 3 | A | A:97.6% | Matrix protein p17 | | 15 |
| 4 | R | R:96.5% | Matrix protein p17 | | 4 |
| 5 | A | A:98.2% | Matrix protein p17 | TURN | 2 |
| 6 | S | S:98.8% | Matrix protein p17 | TURN | 8 |
| 7 | V | V:79.4%,other:20.6% | Matrix protein p17 | STRAND | 7 |
| 8 | L | L:98.8% | Matrix protein p17 | STRAND | 7 |
| 9 | S | S:80.0% | Matrix protein p17 | STRAND | 11 |
| 10 | G | G:98.8% | Matrix protein p17 | STRAND | 5 |
| 11 | G | G:91.2% | Matrix protein p17 | HELIX | 4 |
| 12 | E | K:80.0% | Matrix protein p17 | HELIX | 7 |
| 13 | L | L:99.4% | Matrix protein p17 | HELIX | 2 |
| 14 | D | D:98.8% | Matrix protein p17 | HELIX | 3 |
| 15 | R | A:54.7%,other:45.3% | Matrix protein p17 | HELIX | 4 |
| 16 | W | W:98.8% | Matrix protein p17 | HELIX | 1 |
| 17 | E | E:98.8% | Matrix protein p17 | HELIX | 2 |
| 18 | K | K:85.3% | Matrix protein p17 | HELIX | 3 |
| 19 | I | I:99.4% | Matrix protein p17 | STRAND | 2 |
| 20 | R | R:91.8% | Matrix protein p17 | STRAND | 7 |
| 21 | L | L:100.0% | Matrix protein p17 | STRAND | 5 |
| 22 | R | R:92.9% | Matrix protein p17 | | 8 |
| 23 | P | P:99.4% | Matrix protein p17 | STRAND | 1 |
| 24 | G | G:99.4% | Matrix protein p17 | STRAND | 6 |
| 26 | K | K:91.8% | Matrix protein p17 | | 9 |
| 27 | K | K:98.8% | Matrix protein p17 | | 7 |
| 28 | K | K:74.7%,other:25.3% | Matrix protein p17 | | 6 |
| 29 | Y | Y:100.0% | Matrix protein p17 | | 1 |
| 30 | K | R:68.8%,other:31.2% | Matrix protein p17 | | 7 |
| 31 | L | L:63.5%,M:29.4% | Matrix protein p17 | HELIX | 3 |
| 32 | K | K:100.0% | Matrix protein p17 | HELIX | 3 |
| 33 | H | H:99.4% | Matrix protein p17 | HELIX | 5 |
| 34 | I | I:25.9%,L:71.8% | Matrix protein p17 | HELIX | 3 |
| 35 | V | V:94.1% | Matrix protein p17 | HELIX | 4 |
| 36 | W | W:100.0% | Matrix protein p17 | HELIX | 5 |
| 37 | A | A:100.0% | Matrix protein p17 | HELIX | 5 |
| 38 | S | S:98.2% | Matrix protein p17 | HELIX | 2 |
| 39 | R | R:97.6% | Matrix protein p17 | HELIX | 4 |
| 40 | E | E:100.0% | Matrix protein p17 | HELIX | 3 |
| 41 | L | L:98.8% | Matrix protein p17 | HELIX | 3 |
| 42 | E | E:88.8% | Matrix protein p17 | HELIX | 1 |
| 43 | R | R:95.9% | Matrix protein p17 | HELIX | 2 |
| 44 | F | F:97.6% | Matrix protein p17 | HELIX | 2 |
| 45 | A | A:97.6% | Matrix protein p17 | HELIX | 2 |
| 46 | V | L:57.1%,V:22.9%,other:20.0% | Matrix protein p17 | STRAND | 1 |
| 47 | N | N:90.0% | Matrix protein p17 | STRAND | 2 |
| 48 | P | P:98.2% | Matrix protein p17 | STRAND | 2 |
| 49 | G | G:78.8%,other:21.2% | Matrix protein p17 | | 4 |
| 50 | L | L:98.2% | Matrix protein p17 | TURN | 2 |
| 51 | L | L:95.9% | Matrix protein p17 | TURN | 1 |
| 52 | E | E:97.1% | Matrix protein p17 | TURN | 1 |
| 53 | T | T:88.8% | Matrix protein p17 | | 2 |
| 54 | S | S:31.2%,A:49.4% | Matrix protein p17 | HELIX | 3 |
| 55 | E | E:85.3% | Matrix protein p17 | HELIX | 4 |
| 56 | G | G:100.0% | Matrix protein p17 | HELIX | 1 |
| 57 | C | C:97.1% | Matrix protein p17 | HELIX | 4 |
| 58 | R | Q:47.6%,R:21.8%,other:30.6% | Matrix protein p17 | HELIX | 4 |
| 59 | Q | Q:79.4%,other:20.6% | Matrix protein p17 | HELIX | 3 |
| 60 | I | I:84.7% | Matrix protein p17 | HELIX | 3 |
| 61 | L | I:48.8%,L:27.1%,M:21.2% | Matrix protein p17 | HELIX | 4 |
| 62 | G | G:24.7%,E:36.5%,other:38.8% | Matrix protein p17 | HELIX | 2 |
| 63 | Q | Q:99.4% | Matrix protein p17 | HELIX | 4 |
| 64 | L | L:91.2% | Matrix protein p17 | HELIX | 7 |
| 65 | Q | Q:90.6% | Matrix protein p17 | HELIX | 4 |
| 66 | P | P:80.6% | Matrix protein p17 | HELIX | 4 |
| 67 | S | S:33.5%,A:47.1% | Matrix protein p17 | HELIX | 2 |
| 68 | L | L:82.9% | Matrix protein p17 | TURN | 1 |
| 69 | Q | Q:45.3%,K:40.0% | Matrix protein p17 | TURN | 1 |
| 70 | T | T:98.2% | Matrix protein p17 | TURN | 7 |
| 71 | G | G:99.4% | Matrix protein p17 | | 3 |
| 72 | S | S:69.4%,T:27.6% | Matrix protein p17 | HELIX | 3 |
| 74 | E | E:93.5% | Matrix protein p17 | HELIX | 1 |
| 75 | L | L:81.8% | Matrix protein p17 | HELIX | 5 |
| 76 | R | K:57.6%,R:33.5% | Matrix protein p17 | HELIX | 4 |
| 77 | S | S:100.0% | Matrix protein p17 | HELIX | 1 |
| 78 | L | L:100.0% | Matrix protein p17 | HELIX | 3 |
| 79 | Y | F:51.2%,Y:42.9% | Matrix protein p17 | HELIX | 4 |
| 81 | T | T:87.6% | Matrix protein p17 | HELIX | 6 |
| 82 | V | I:23.5%,V:70.0% | Matrix protein p17 | HELIX | 7 |
| 83 | A | A:87.1% | Matrix protein p17 | HELIX | 3 |
| 84 | T | T:62.4%,V:37.6% | Matrix protein p17 | HELIX | 1 |
| 85 | L | L:99.4% | Matrix protein p17 | HELIX | 4 |
| 86 | Y | Y:80.0% | Matrix protein p17 | HELIX | 1 |
| 87 | C | C:85.9% | Matrix protein p17 | HELIX | 1 |
| 89 | H | H:98.2% | Matrix protein p17 | HELIX | 2 |
| 90 | Q | Q:67.1%,other:32.9% | Matrix protein p17 | HELIX | 1 |
| 91 | R | K:30.6%,R:58.8% | Matrix protein p17 | | 3 |
| 92 | I | I:84.7% | Matrix protein p17 | | 3 |
| 93 | E | D:32.4%,E:47.6% | Matrix protein p17 | | 2 |
| 94 | I | V:80.0% | Matrix protein p17 | | 2 |
| 96 | D | D:97.1% | Matrix protein p17 | | 5 |
| 97 | T | T:100.0% | Matrix protein p17 | HELIX | 1 |
| 98 | K | K:88.8% | Matrix protein p17 | HELIX | 2 |
| 99 | E | E:94.7% | Matrix protein p17 | HELIX | 5 |
| 100 | A | A:98.8% | Matrix protein p17 | HELIX | 2 |
| 101 | L | L:92.9% | Matrix protein p17 | HELIX | 1 |
| 102 | D | D:72.4%,E:20.6% | Matrix protein p17 | HELIX | 2 |
| 103 | K | K:87.1% | Matrix protein p17 | HELIX | 6 |
| 104 | I | I:55.3%,L:24.1%,other:20.6% | Matrix protein p17 | HELIX | 2 |
| 105 | E | E:85.9% | Matrix protein p17 | HELIX | 1 |
| 106 | E | E:85.9% | Matrix protein p17 | HELIX | 2 |
| 107 | E | I:22.9%,E:44.1%,other:32.9% | Matrix protein p17 | HELIX | 2 |
| 108 | Q | Q:92.4% | Matrix protein p17 | HELIX | 1 |
| 109 | N | N:64.7%,other:35.3% | Matrix protein p17 | HELIX | 1 |
| 110 | K | K:85.9% | Matrix protein p17 | HELIX | 5 |
| 111 | S | S:70.6%,other:29.4% | Matrix protein p17 | HELIX | 1 |
| 112 | K | Q:35.3%,K:51.2% | Matrix protein p17 | HELIX | 3 |
| 113 | K | Q:67.1%,K:21.8% | Matrix protein p17 | | 1 |
| 114 | K | K:78.2%,other:21.8% | Matrix protein p17 | | 2 |
| 116 | Q | Q:92.4% | Matrix protein p17 | STRAND | 1 |
| 117 | Q | Q:85.9% | Matrix protein p17 | STRAND | 1 |
| 118 | A | A:80.6% | Matrix protein p17 | STRAND | 2 |
| 119 | A | A:77.1%,other:22.9% | Matrix protein p17 | | 1 |
| 120 | A | A:74.7%,other:25.3% | Matrix protein p17 | | 1 |
| 121 | D | D:50.0%,other:50.0% | Matrix protein p17 | | 2 |
| 122 | T | T:54.1%,other:45.9% | Matrix protein p17 | | 2 |
| 123 | G | G:80.0% | Matrix protein p17 | | 3 |
| 124 | H | S:27.1%,N:36.5%,gap:23.5% | Matrix protein p17 | | 3 |
| 125 | S | S:53.5%,gap:22.9%,other:23.5% | Matrix protein p17 | | 3 |
| 126 | N | S:44.1%,gap:43.5% | Matrix protein p17 | | 4 |
| 127 | Q | Q:36.5%,K:23.5%,other:40.0% | Matrix protein p17 | | 3 |
| 128 | V | V:74.1%,other:25.9% | Matrix protein p17 | | 3 |
| 129 | S | S:97.6% | Matrix protein p17 | | 1 |
| 130 | Q | Q:94.1% | Matrix protein p17 | | 1 |
| 131 | N | N:99.4% | Matrix protein p17 | | 1 |
| 132 | Y | Y:94.7% | Matrix protein p17 | | 5 |
| 133 | P | P:99.4% | Gag polyprotein | | 9 |
| 134 | I | I:95.9% | Gag polyprotein | | 5 |
| 135 | V | V:96.5% | Gag polyprotein | | 3 |
| 136 | Q | Q:95.3% | Gag polyprotein | | 3 |
| 137 | N | N:98.2% | Gag polyprotein | | 3 |
| 138 | I | A:59.4%,L:31.8% | Gag polyprotein | | 4 |
| 139 | Q | Q:98.2% | Gag polyprotein | | 4 |
| 140 | G | G:99.4% | Gag polyprotein | | 3 |
| 141 | Q | Q:97.6% | Gag polyprotein | | 3 |
| 142 | M | M:90.6% | Gag polyprotein | | 4 |
| 143 | V | V:78.8%,other:21.2% | Gag polyprotein | | 1 |
| 144 | H | H:95.9% | Gag polyprotein | | 9 |
| 145 | Q | Q:97.1% | Gag polyprotein | | 11 |
| 146 | A | S:20.6%,P:24.1%,A:52.9% | Gag polyprotein | | 7 |
| 147 | I | I:44.7%,L:41.8% | Gag polyprotein | | 6 |
| 148 | S | S:94.7% | Gag polyprotein | | 7 |
| 149 | P | P:97.6% | Gag polyprotein | HELIX | 2 |
| 150 | R | R:99.4% | Gag polyprotein | HELIX | 7 |
| 151 | T | T:100.0% | Gag polyprotein | HELIX | 3 |
| 152 | L | L:99.4% | Gag polyprotein | HELIX | 3 |
| 153 | N | N:99.4% | Gag polyprotein | HELIX | 7 |
| 154 | A | A:100.0% | Gag polyprotein | HELIX | 2 |
| 155 | W | W:100.0% | Gag polyprotein | HELIX | 3 |
| 156 | V | V:98.8% | Gag polyprotein | HELIX | 1 |
| 157 | K | K:99.4% | Gag polyprotein | HELIX | 6 |
| 158 | V | V:91.8% | Gag polyprotein | HELIX | 3 |
| 159 | V | I:49.4%,V:49.4% | Gag polyprotein | HELIX | 2 |
| 160 | E | E:99.4% | Gag polyprotein | HELIX | 2 |
| 161 | E | E:98.2% | Gag polyprotein | HELIX | 4 |
| 162 | K | K:98.8% | Gag polyprotein | HELIX | 3 |
| 163 | A | A:85.3% | Gag polyprotein | TURN | 3 |
| 164 | F | F:98.8% | Gag polyprotein | TURN | 4 |
| 165 | S | S:77.6%,N:22.4% | Gag polyprotein | | 6 |
| 166 | P | P:99.4% | Gag polyprotein | TURN | 1 |
| 167 | E | E:100.0% | Gag polyprotein | TURN | 2 |
| 168 | V | V:95.9% | Gag polyprotein | HELIX | 3 |
| 169 | I | I:100.0% | Gag polyprotein | HELIX | 6 |
| 170 | P | P:99.4% | Gag polyprotein | HELIX | 4 |
| 171 | M | M:99.4% | Gag polyprotein | HELIX | 4 |
| 172 | F | F:100.0% | Gag polyprotein | HELIX | 4 |
| 173 | S | S:71.2%,T:20.6% | Gag polyprotein | HELIX | 2 |
| 174 | A | A:99.4% | Gag polyprotein | HELIX | 3 |
| 175 | L | L:99.4% | Gag polyprotein | HELIX | 1 |
| 176 | S | S:97.6% | Gag polyprotein | TURN | 1 |
| 177 | E | E:97.6% | Gag polyprotein | TURN | 4 |
| 178 | G | G:100.0% | Gag polyprotein | TURN | 2 |
| 180 | T | T:95.9% | Gag polyprotein | | 3 |
| 181 | P | P:98.8% | Gag polyprotein | HELIX | 2 |
| 182 | Q | Q:90.0% | Gag polyprotein | HELIX | 7 |
| 183 | D | D:99.4% | Gag polyprotein | HELIX | 4 |
| 184 | L | L:95.3% | Gag polyprotein | HELIX | 4 |
| 185 | N | N:100.0% | Gag polyprotein | HELIX | 2 |
| 186 | T | T:67.1%,M:27.6% | Gag polyprotein | HELIX | 7 |
| 187 | M | M:100.0% | Gag polyprotein | HELIX | 2 |
| 188 | L | L:98.8% | Gag polyprotein | HELIX | 4 |
| 189 | N | N:98.8% | Gag polyprotein | HELIX | 5 |
| 190 | T | I:28.2%,T:64.1% | Gag polyprotein | TURN | 4 |
| 191 | V | V:93.5% | Gag polyprotein | | 4 |
| 192 | G | G:100.0% | Gag polyprotein | | 2 |
| 193 | G | G:98.8% | Gag polyprotein | | 2 |
| 194 | H | H:100.0% | Gag polyprotein | | 6 |
| 195 | Q | Q:99.4% | Gag polyprotein | HELIX | 4 |
| 196 | A | A:94.7% | Gag polyprotein | HELIX | 3 |
| 197 | A | A:98.8% | Gag polyprotein | HELIX | 2 |
| 198 | M | M:96.5% | Gag polyprotein | HELIX | 4 |
| 199 | Q | Q:100.0% | Gag polyprotein | HELIX | 3 |
| 200 | M | M:92.4% | Gag polyprotein | HELIX | 5 |
| 201 | L | L:99.4% | Gag polyprotein | HELIX | 2 |
| 202 | K | K:100.0% | Gag polyprotein | HELIX | 6 |
| 203 | E | D:74.7%,E:24.1% | Gag polyprotein | HELIX | 2 |
| 205 | I | I:100.0% | Gag polyprotein | HELIX | 4 |
| 206 | N | N:100.0% | Gag polyprotein | HELIX | 2 |
| 207 | E | E:94.7% | Gag polyprotein | HELIX | 3 |
| 208 | E | E:100.0% | Gag polyprotein | HELIX | 1 |
| 209 | A | A:98.8% | Gag polyprotein | HELIX | 4 |
| 210 | A | A:97.1% | Gag polyprotein | HELIX | 5 |
| 211 | E | E:90.6% | Gag polyprotein | HELIX | 3 |
| 212 | W | W:98.8% | Gag polyprotein | HELIX | 1 |
| 213 | D | D:99.4% | Gag polyprotein | HELIX | 2 |
| 214 | R | R:98.2% | Gag polyprotein | HELIX | 3 |
| 215 | V | L:52.9%,other:47.1% | Gag polyprotein | HELIX | 3 |
| 216 | H | H:99.4% | Gag polyprotein | | 6 |
| 217 | P | P:99.4% | Gag polyprotein | | 2 |
| 218 | V | V:74.7%,other:25.3% | Gag polyprotein | TURN | 7 |
| 219 | H | Q:31.8%,H:61.2% | Gag polyprotein | TURN | 7 |
| 220 | A | A:95.3% | Gag polyprotein | | 5 |
| 221 | G | G:100.0% | Gag polyprotein | | 5 |
| 222 | P | P:100.0% | Gag polyprotein | | 6 |
| 223 | I | I:68.8%,other:31.2% | Gag polyprotein | | 14 |
| 224 | A | P:68.2%,A:30.0% | Gag polyprotein | | 6 |
| 225 | P | P:98.2% | Gag polyprotein | | 3 |
| 226 | G | G:99.4% | Gag polyprotein | | 4 |
| 227 | Q | Q:100.0% | Gag polyprotein | | 4 |
| 228 | M | I:30.6%,M:62.4% | Gag polyprotein | | 6 |
| 229 | R | R:100.0% | Gag polyprotein | | 2 |
| 230 | E | E:92.9% | Gag polyprotein | | 3 |
| 231 | P | P:100.0% | Gag polyprotein | | 2 |
| 232 | R | R:94.7% | Gag polyprotein | | 5 |
| 234 | S | S:98.2% | Gag polyprotein | HELIX | 3 |
| 235 | D | D:100.0% | Gag polyprotein | HELIX | 1 |
| 237 | A | A:100.0% | Gag polyprotein | TURN | 4 |
| 238 | G | G:99.4% | Gag polyprotein | TURN | 1 |
| 239 | T | T:95.3% | Gag polyprotein | TURN | 4 |
| 240 | T | T:98.8% | Gag polyprotein | TURN | 2 |
| 241 | S | S:99.4% | Gag polyprotein | | 4 |
| 242 | T | T:84.1% | Gag polyprotein | | 6 |
| 243 | L | L:88.2% | Gag polyprotein | HELIX | 5 |
| 244 | Q | Q:97.1% | Gag polyprotein | HELIX | 6 |
| 245 | E | E:98.8% | Gag polyprotein | HELIX | 3 |
| 247 | I | I:90.0% | Gag polyprotein | HELIX | 5 |
| 248 | G | A:27.6%,G:32.4%,other:40.0% | Gag polyprotein | HELIX | 6 |
| 249 | W | W:100.0% | Gag polyprotein | HELIX | 3 |
| 250 | M | M:93.5% | Gag polyprotein | HELIX | 5 |
| 251 | T | T:99.4% | Gag polyprotein | STRAND | 3 |
| 252 | N | S:55.3%,other:44.7% | Gag polyprotein | STRAND | 4 |
| 253 | N | N:98.2% | Gag polyprotein | STRAND | 3 |
| 254 | P | P:95.3% | Gag polyprotein | STRAND | 2 |
| 255 | P | P:95.9% | Gag polyprotein | | 1 |
| 256 | I | I:67.1%,V:32.4% | Gag polyprotein | | 4 |
| 257 | P | P:100.0% | Gag polyprotein | | 2 |
| 258 | V | V:100.0% | Gag polyprotein | HELIX | 2 |
| 260 | E | D:32.9%,E:66.5% | Gag polyprotein | HELIX | 4 |
| 261 | I | I:98.8% | Gag polyprotein | HELIX | 3 |
| 262 | Y | Y:100.0% | Gag polyprotein | HELIX | 4 |
| 263 | K | K:91.8% | Gag polyprotein | HELIX | 4 |
| 264 | R | R:94.7% | Gag polyprotein | HELIX | 6 |
| 267 | I | I:88.8% | Gag polyprotein | HELIX | 4 |
| 268 | L | L:95.9% | Gag polyprotein | HELIX | 4 |
| 269 | G | G:100.0% | Gag polyprotein | HELIX | 1 |
| 270 | L | L:99.4% | Gag polyprotein | HELIX | 3 |
| 271 | N | N:99.4% | Gag polyprotein | HELIX | 2 |
| 272 | K | K:97.6% | Gag polyprotein | HELIX | 1 |
| 274 | V | V:99.4% | Gag polyprotein | HELIX | 2 |
| 275 | R | R:94.1% | Gag polyprotein | HELIX | 2 |
| 276 | M | M:98.8% | Gag polyprotein | HELIX | 2 |
| 277 | Y | Y:100.0% | Gag polyprotein | HELIX | 3 |
| 278 | S | S:98.8% | Gag polyprotein | | 5 |
| 279 | P | P:100.0% | Gag polyprotein | | 4 |
| 280 | T | V:87.6% | Gag polyprotein | | 7 |
| 281 | S | S:95.9% | Gag polyprotein | | 7 |
| 282 | I | I:100.0% | Gag polyprotein | HELIX | 2 |
| 283 | L | L:99.4% | Gag polyprotein | HELIX | 4 |
| 284 | D | D:96.5% | Gag polyprotein | HELIX | 1 |
| 285 | I | I:98.8% | Gag polyprotein | | 2 |
| 286 | R | K:37.1%,R:62.9% | Gag polyprotein | | 5 |
| 287 | Q | Q:100.0% | Gag polyprotein | | 2 |
| 288 | G | G:100.0% | Gag polyprotein | | 4 |
| 289 | P | P:99.4% | Gag polyprotein | TURN | 1 |
| 290 | K | K:98.8% | Gag polyprotein | TURN | 5 |
| 291 | E | E:98.8% | Gag polyprotein | | 4 |
| 292 | P | P:98.8% | Gag polyprotein | | 1 |
| 293 | F | F:100.0% | Gag polyprotein | HELIX | 4 |
| 294 | R | R:99.4% | Gag polyprotein | HELIX | 2 |
| 295 | D | D:98.8% | Gag polyprotein | HELIX | 3 |
| 296 | Y | Y:100.0% | Gag polyprotein | HELIX | 3 |
| 297 | V | V:100.0% | Gag polyprotein | HELIX | 3 |
| 298 | D | D:99.4% | Gag polyprotein | HELIX | 2 |
| 299 | R | R:97.6% | Gag polyprotein | HELIX | 3 |
| 300 | F | F:99.4% | Gag polyprotein | HELIX | 2 |
| 301 | Y | F:73.5%,Y:26.5% | Gag polyprotein | HELIX | 6 |
| 302 | K | K:97.6% | Gag polyprotein | HELIX | 2 |
| 303 | T | T:87.1% | Gag polyprotein | HELIX | 4 |
| 304 | L | L:98.8% | Gag polyprotein | HELIX | 3 |
| 305 | R | R:100.0% | Gag polyprotein | HELIX | 4 |
| 307 | E | E:100.0% | Gag polyprotein | | 1 |
| 308 | Q | Q:100.0% | Gag polyprotein | | 1 |
| 309 | A | A:95.3% | Gag polyprotein | | 2 |
| 310 | S | S:23.5%,T:75.9% | Gag polyprotein | | 5 |
| 311 | Q | Q:98.8% | Gag polyprotein | HELIX | 2 |
| 312 | E | D:30.0%,E:69.4% | Gag polyprotein | HELIX | 7 |
| 313 | V | V:100.0% | Gag polyprotein | HELIX | 2 |
| 314 | K | K:99.4% | Gag polyprotein | HELIX | 3 |
| 315 | N | G:24.7%,N:67.1% | Gag polyprotein | HELIX | 3 |
| 316 | W | W:99.4% | Gag polyprotein | HELIX | 4 |
| 317 | M | M:100.0% | Gag polyprotein | HELIX | 2 |
| 318 | T | T:100.0% | Gag polyprotein | HELIX | 1 |
| 319 | E | D:51.2%,E:48.2% | Gag polyprotein | HELIX | 7 |
| 320 | T | T:98.8% | Gag polyprotein | HELIX | 1 |
| 321 | L | L:100.0% | Gag polyprotein | HELIX | 2 |
| 322 | L | L:100.0% | Gag polyprotein | HELIX | 4 |
| 323 | V | V:89.4% | Gag polyprotein | HELIX | 1 |
| 324 | Q | Q:99.4% | Gag polyprotein | HELIX | 4 |
| 325 | N | N:100.0% | Gag polyprotein | TURN | 3 |
| 326 | A | A:95.3% | Gag polyprotein | | 3 |
| 327 | N | N:100.0% | Gag polyprotein | | 3 |
| 329 | D | D:100.0% | Gag polyprotein | HELIX | 3 |
| 330 | C | C:98.8% | Gag polyprotein | HELIX | 2 |
| 331 | K | K:96.5% | Gag polyprotein | HELIX | 3 |
| 332 | T | S:21.8%,T:62.9% | Gag polyprotein | HELIX | 3 |
| 333 | I | I:98.2% | Gag polyprotein | HELIX | 3 |
| 334 | L | L:100.0% | Gag polyprotein | HELIX | 2 |
| 335 | K | K:57.6%,R:41.8% | Gag polyprotein | HELIX | 3 |
| 336 | A | A:91.8% | Gag polyprotein | HELIX | 2 |
| 337 | L | L:100.0% | Gag polyprotein | HELIX | 1 |
| 339 | P | P:61.8%,other:38.2% | Gag polyprotein | TURN | 3 |
| 340 | A | G:84.7% | Gag polyprotein | TURN | 1 |
| 342 | T | S:20.6%,T:79.4% | Gag polyprotein | | 3 |
| 343 | L | L:95.3% | Gag polyprotein | HELIX | 3 |
| 344 | E | E:98.2% | Gag polyprotein | HELIX | 2 |
| 345 | E | E:100.0% | Gag polyprotein | HELIX | 4 |
| 346 | M | M:99.4% | Gag polyprotein | HELIX | 2 |
| 347 | M | M:98.2% | Gag polyprotein | HELIX | 2 |
| 348 | T | T:94.1% | Gag polyprotein | HELIX | 4 |
| 349 | A | A:98.8% | Gag polyprotein | HELIX | 2 |
| 350 | C | C:98.8% | Gag polyprotein | TURN | 3 |
| 351 | Q | Q:98.8% | Gag polyprotein | | 3 |
| 352 | G | G:99.4% | Gag polyprotein | | 1 |
| 353 | V | V:99.4% | Gag polyprotein | | 2 |
| 354 | G | G:99.4% | Gag polyprotein | | 1 |
| 355 | G | G:99.4% | Gag polyprotein | | 2 |
| 356 | P | P:99.4% | Gag polyprotein | | 1 |
| 357 | G | S:44.1%,G:47.1% | Gag polyprotein | | 6 |
| 358 | H | H:100.0% | Gag polyprotein | | 2 |
| 359 | K | K:99.4% | Gag polyprotein | | 4 |
| 360 | A | A:99.4% | Gag polyprotein | | 4 |
| 361 | R | R:98.8% | Gag polyprotein | | 2 |
| 362 | V | V:92.9% | Gag polyprotein | | 3 |
| 363 | L | L:99.4% | Gag polyprotein | | 9 |
| 364 | A | A:98.2% | Gag polyprotein | | 11 |
| 365 | E | E:99.4% | Gag polyprotein | | 4 |
| 366 | A | A:100.0% | Gag polyprotein | | 9 |
| 367 | M | M:99.4% | Gag polyprotein | | 10 |
| 368 | S | S:93.5% | Gag polyprotein | | 1 |
| 369 | Q | Q:87.6% | Gag polyprotein | | 1 |
| 370 | V | A:45.3%,V:40.0% | Gag polyprotein | | 3 |
| 371 | T | Q:32.4%,T:37.6%,other:30.0% | Gag polyprotein | | 2 |
| 372 | N | gap:60.0%,other:40.0% | Gag polyprotein | | 1 |
| 373 | S | N:34.1%,other:65.9% | Gag polyprotein | | 3 |
| 374 | A | T:42.4%,A:37.1%,other:20.6% | Gag polyprotein | | 7 |
| 375 | T | A:34.7%,N:27.1%,other:38.2% | Gag polyprotein | | 3 |
| 376 | I | I:68.2%,V:28.2% | Gag polyprotein | | 1 |
| 377 | M | M:81.2% | Gag polyprotein | | 4 |
| 378 | M | M:92.9% | Nucleocapsid protein p7 | | 3 |
| 380 | R | K:44.1%,R:51.8% | Nucleocapsid protein p7 | | 4 |
| 381 | G | S:42.4%,G:55.9% | Nucleocapsid protein p7 | | 2 |
| 382 | N | N:94.1% | Nucleocapsid protein p7 | | 2 |
| 383 | F | F:91.8% | Nucleocapsid protein p7 | | 2 |
| 384 | R | K:75.9%,other:24.1% | Nucleocapsid protein p7 | | 7 |
| 386 | Q | Q:50.0%,P:35.3% | Nucleocapsid protein p7 | | 1 |
| 387 | R | K:36.5%,R:44.1% | Nucleocapsid protein p7 | | 5 |
| 388 | K | K:33.5%,R:62.4% | Nucleocapsid protein p7 | | 2 |
| 389 | I | I:30.6%,other:69.4% | Nucleocapsid protein p7 | | 3 |
| 390 | V | I:67.1%,V:32.4% | Nucleocapsid protein p7 | | 4 |
| 391 | K | K:98.8% | Nucleocapsid protein p7 | | 2 |
| 392 | C | C:100.0% | Nucleocapsid protein p7 | | 2 |
| 393 | F | F:98.8% | Nucleocapsid protein p7 | STRAND | 4 |
| 394 | N | N:100.0% | Nucleocapsid protein p7 | STRAND | 7 |
| 395 | C | C:100.0% | Nucleocapsid protein p7 | STRAND | 2 |
| 396 | G | G:99.4% | Nucleocapsid protein p7 | | 1 |
| 397 | K | K:95.3% | Nucleocapsid protein p7 | | 6 |
| 398 | E | E:92.9% | Nucleocapsid protein p7 | | 5 |
| 399 | G | G:98.8% | Nucleocapsid protein p7 | TURN | 3 |
| 400 | H | H:99.4% | Nucleocapsid protein p7 | | 2 |
| 401 | T | I:38.8%,L:55.9% | Nucleocapsid protein p7 | | 3 |
| 402 | A | A:98.8% | Nucleocapsid protein p7 | TURN | 2 |
| 403 | R | K:27.1%,R:72.9% | Nucleocapsid protein p7 | TURN | 1 |
| 404 | N | N:98.8% | Nucleocapsid protein p7 | TURN | 3 |
| 405 | C | C:100.0% | Nucleocapsid protein p7 | | 2 |
| 406 | R | R:91.2% | Nucleocapsid protein p7 | | 3 |
| 407 | A | A:100.0% | Nucleocapsid protein p7 | | 1 |
| 408 | P | P:100.0% | Nucleocapsid protein p7 | | 2 |
| 409 | R | R:97.6% | Nucleocapsid protein p7 | | 3 |
| 410 | K | K:92.9% | Nucleocapsid protein p7 | | 2 |
| 411 | K | K:89.4% | Nucleocapsid protein p7 | | 1 |
| 412 | G | G:99.4% | Nucleocapsid protein p7 | | 4 |
| 413 | C | C:99.4% | Nucleocapsid protein p7 | | 1 |
| 414 | W | W:99.4% | Nucleocapsid protein p7 | STRAND | 3 |
| 415 | K | K:97.1% | Nucleocapsid protein p7 | STRAND | 1 |
| 416 | C | C:100.0% | Nucleocapsid protein p7 | STRAND | 2 |
| 417 | G | G:99.4% | Nucleocapsid protein p7 | | 3 |
| 418 | K | K:63.5%,R:22.4% | Nucleocapsid protein p7 | | 2 |
| 419 | E | E:98.8% | Nucleocapsid protein p7 | | 3 |
| 420 | G | G:100.0% | Nucleocapsid protein p7 | | 1 |
| 421 | H | H:98.8% | Nucleocapsid protein p7 | | 2 |
| 422 | Q | Q:99.4% | Nucleocapsid protein p7 | | 1 |
| 423 | M | M:96.5% | Nucleocapsid protein p7 | TURN | 4 |
| 424 | K | K:98.2% | Nucleocapsid protein p7 | TURN | 1 |
| 425 | D | D:94.1% | Nucleocapsid protein p7 | TURN | 3 |
| 426 | C | C:100.0% | Nucleocapsid protein p7 | | 2 |
| 427 | T | T:82.9% | Nucleocapsid protein p7 | TURN | 2 |
| 428 | E | E:90.6% | Nucleocapsid protein p7 | TURN | 2 |
| 429 | R | R:92.9% | Nucleocapsid protein p7 | | 1 |
| 430 | Q | Q:98.2% | Nucleocapsid protein p7 | | 1 |
| 431 | A | A:97.6% | Nucleocapsid protein p7 | | 2 |
| 432 | N | N:99.4% | Nucleocapsid protein p7 | | 4 |
| 436 | K | K:88.2% | Gag polyprotein | | 4 |
| 437 | I | I:77.1%,other:22.9% | Gag polyprotein | | 5 |
| 440 | S | S:88.2% | Gag polyprotein | | 1 |
| 441 | Y | H:31.2%,N:37.1%,other:31.8% | Gag polyprotein | | 1 |
| 445 | P | P:100.0% | Gag polyprotein | | 1 |
| 448 | F | F:94.7% | Gag polyprotein | | 2 |
| 449 | L | P:27.1%,L:64.7% | p6-gag | | 6 |
| 450 | Q | Q:98.8% | p6-gag | | 2 |
| 451 | S | S:53.5%,N:35.9% | p6-gag | | 4 |
| 452 | R | R:95.3% | p6-gag | | 1 |
| 453 | P | P:74.1%,other:25.9% | p6-gag | | 7 |
| 454 | E | E:95.3% | p6-gag | | 3 |
| 455 | P | P:100.0% | p6-gag | | 5 |
| 456 | T | T:85.9% | p6-gag | | 3 |
| 457 | A | A:99.4% | p6-gag | | 4 |
| 458 | P | P:98.8% | p6-gag | | 3 |
| 459 | P | P:100.0% | p6-gag | | 3 |
| 460 | E | A:79.4%,other:20.6% | p6-gag | | 4 |
| 461 | E | E:97.1% | p6-gag | | 1 |
| 462 | S | S:75.9%,other:24.1% | p6-gag | | 4 |
| 463 | F | F:77.1%,other:22.9% | p6-gag | | 2 |
| 464 | R | G:70.6%,other:29.4% | p6-gag | | 11 |
| 465 | S | F:65.9%,other:34.1% | p6-gag | | 2 |
| 466 | G | G:76.5%,other:23.5% | p6-gag | | 1 |
| 467 | V | E:93.5% | p6-gag | | 1 |
| 468 | E | E:90.0% | p6-gag | | 2 |
| 469 | T | I:55.9%,T:25.9% | p6-gag | | 2 |
| 470 | T | gap:80.6% | p6-gag | | 1 |
| 471 | T | T:63.5%,A:25.9% | p6-gag | | 3 |
| 472 | P | S:20.6%,P:70.6% | p6-gag | | 2 |
| 473 | P | S:71.8%,other:28.2% | p6-gag | | 1 |
| 474 | Q | Q:24.1%,P:55.3%,other:20.6% | p6-gag | | 2 |
| 475 | K | K:90.6% | p6-gag | | 2 |
| 476 | Q | Q:90.6% | p6-gag | | 3 |
| 477 | E | E:91.8% | p6-gag | | 2 |
| 478 | P | Q:46.5%,P:30.0%,other:23.5% | p6-gag | | 4 |
| 479 | I | gap:72.4%,other:27.6% | p6-gag | | 4 |
| 480 | D | D:22.4%,gap:72.4% | p6-gag | | 1 |
| 481 | K | K:73.5%,other:26.5% | p6-gag | | 3 |
| 482 | E | E:80.0% | p6-gag | | 4 |
| 483 | L | L:32.9%,Y:26.5%,other:40.6% | p6-gag | | 2 |
| 484 | Y | P:42.9%,Y:36.5%,other:20.6% | p6-gag | | 5 |
| 485 | P | P:92.4% | p6-gag | | 1 |
| 486 | L | L:78.2%,other:21.8% | p6-gag | | 3 |
| 488 | S | S:97.6% | p6-gag | | 5 |
| 489 | L | L:100.0% | p6-gag | | 3 |
| 490 | R | K:83.5% | p6-gag | | 3 |
| 491 | S | S:100.0% | p6-gag | | 1 |
| 492 | L | L:99.4% | p6-gag | | 4 |
| 493 | F | F:100.0% | p6-gag | | 5 |
| 494 | G | G:100.0% | p6-gag | | 2 |
| 495 | N | S:30.6%,N:63.5% | p6-gag | | 1 |
| 496 | D | D:99.4% | p6-gag | | 2 |
| 497 | P | P:88.8% | p6-gag | | 1 |
| 498 | S | L:44.1%,gap:31.2%,other:24.7% | p6-gag | | 2 |
| 499 | S | S:80.0% | p6-gag | | 1 |