HIV mutation database

Position	Amino Acid	Site conservation	Chain	Secondary structure	Number of mutations

2	G	gap:99.4%	Matrix protein p17		11
3	A	gap:99.4%	Matrix protein p17		15
4	R	gap:99.4%	Matrix protein p17		4
5	A	gap:99.4%	Matrix protein p17		1
6	S	gap:99.4%	Matrix protein p17		7
7	V	gap:99.4%	Matrix protein p17		7
8	L	gap:99.4%	Matrix protein p17		7
9	S	gap:99.4%	Matrix protein p17		10
10	G	gap:99.4%	Matrix protein p17		4
11	G	gap:99.4%	Matrix protein p17		1
12	E	gap:99.4%	Matrix protein p17		6
13	L	gap:99.4%	Matrix protein p17		1
14	D	gap:99.4%	Matrix protein p17		2
15	R	gap:99.4%	Matrix protein p17		4
16	W	gap:99.4%	Matrix protein p17		1
17	E	gap:99.4%	Matrix protein p17		2
18	K	gap:99.4%	Matrix protein p17		2
19	I	gap:99.4%	Matrix protein p17		2
20	R	gap:99.4%	Matrix protein p17		3
21	L	gap:99.4%	Matrix protein p17		4
22	R	gap:99.4%	Matrix protein p17		8
23	P	gap:99.4%	Matrix protein p17		1
24	G	gap:99.4%	Matrix protein p17		5
26	K	gap:99.4%	Matrix protein p17		8
27	K	gap:99.4%	Matrix protein p17		6
28	K	gap:99.4%	Matrix protein p17		5
29	Y	gap:99.4%	Matrix protein p17		1
30	K	gap:99.4%	Matrix protein p17		6
31	L	gap:99.4%	Matrix protein p17		2
32	K	gap:99.4%	Matrix protein p17		3
33	H	gap:99.4%	Matrix protein p17		5
34	I	gap:99.4%	Matrix protein p17		3
35	V	gap:99.4%	Matrix protein p17		3
36	W	gap:99.4%	Matrix protein p17		5
37	A	gap:99.4%	Matrix protein p17		4
39	R	gap:99.4%	Matrix protein p17		3
40	E	gap:99.4%	Matrix protein p17		2
41	L	gap:99.4%	Matrix protein p17		6
42	E	gap:99.4%	Matrix protein p17		1
43	R	gap:99.4%	Matrix protein p17		2
44	F	gap:99.4%	Matrix protein p17		2
45	A	gap:99.4%	Matrix protein p17		2
46	V	gap:99.4%	Matrix protein p17		1
47	N	gap:99.4%	Matrix protein p17		2
48	P	gap:99.4%	Matrix protein p17		2
49	G	gap:99.4%	Matrix protein p17		2
50	L	gap:99.4%	Matrix protein p17		2
51	L	gap:99.4%	Matrix protein p17		2
52	E	gap:99.4%	Matrix protein p17		1
53	T	gap:99.4%	Matrix protein p17		2
54	S	gap:99.4%	Matrix protein p17		3
55	E	gap:99.4%	Matrix protein p17		4
56	G	gap:99.4%	Matrix protein p17		1
57	C	gap:99.4%	Matrix protein p17		4
58	R	gap:99.4%	Matrix protein p17		3
59	Q	gap:99.4%	Matrix protein p17		3
60	I	gap:99.4%	Matrix protein p17		3
61	L	gap:99.4%	Matrix protein p17		4
62	G	gap:99.4%	Matrix protein p17		2
63	Q	gap:99.4%	Matrix protein p17		4
64	L	gap:99.4%	Matrix protein p17		4
65	Q	gap:99.4%	Matrix protein p17		4
66	P	gap:99.4%	Matrix protein p17		4
67	S	gap:99.4%	Matrix protein p17		2
68	L	gap:99.4%	Matrix protein p17		1
69	Q	gap:99.4%	Matrix protein p17		1
70	T	gap:99.4%	Matrix protein p17		4
71	G	gap:99.4%	Matrix protein p17		1
72	S	gap:99.4%	Matrix protein p17		3
74	E	gap:99.4%	Matrix protein p17		1
75	L	gap:99.4%	Matrix protein p17		5
76	R	gap:99.4%	Matrix protein p17		3
77	S	gap:99.4%	Matrix protein p17		1
78	L	gap:99.4%	Matrix protein p17		2
79	Y	gap:99.4%	Matrix protein p17		4
81	T	gap:99.4%	Matrix protein p17		3
82	V	gap:99.4%	Matrix protein p17		4
83	A	gap:99.4%	Matrix protein p17		3
84	T	gap:99.4%	Matrix protein p17		1
85	L	gap:99.4%	Matrix protein p17		3
86	Y	gap:99.4%	Matrix protein p17		1
87	C	gap:99.4%	Matrix protein p17		1
91	R	gap:99.4%	Matrix protein p17		2
92	I	gap:99.4%	Matrix protein p17		2
93	E	gap:99.4%	Matrix protein p17		2
94	I	gap:99.4%	Matrix protein p17		1
96	D	gap:99.4%	Matrix protein p17		5
98	K	gap:99.4%	Matrix protein p17		2
99	E	gap:99.4%	Matrix protein p17		5
100	A	gap:99.4%	Matrix protein p17		1
101	L	gap:99.4%	Matrix protein p17		1
102	D	gap:99.4%	Matrix protein p17		2
103	K	gap:99.4%	Matrix protein p17		3
104	I	gap:99.4%	Matrix protein p17		1
105	E	gap:99.4%	Matrix protein p17		1
106	E	gap:99.4%	Matrix protein p17		2
107	E	gap:99.4%	Matrix protein p17		2
108	Q	gap:99.4%	Matrix protein p17		1
109	N	gap:99.4%	Matrix protein p17		1
110	K	gap:99.4%	Matrix protein p17		2
111	S	gap:99.4%	Matrix protein p17		1
112	K	gap:99.4%	Matrix protein p17		3
114	K	gap:99.4%	Matrix protein p17		1
116	Q	gap:99.4%	Matrix protein p17		1
117	Q	gap:99.4%	Matrix protein p17		1
118	A	gap:99.4%	Matrix protein p17		1
119	A	gap:99.4%	Matrix protein p17		1
120	A	gap:99.4%	Matrix protein p17		1
122	T	gap:99.4%	Matrix protein p17		1
123	G	gap:99.4%	Matrix protein p17		3
124	H	gap:99.4%	Matrix protein p17		3
125	S	gap:99.4%	Matrix protein p17		3
126	N	gap:99.4%	Matrix protein p17		4
127	Q	gap:99.4%	Matrix protein p17		2
128	V	gap:99.4%	Matrix protein p17		2
129	S	gap:99.4%	Matrix protein p17		1
130	Q	gap:99.4%	Matrix protein p17		1
131	N	gap:99.4%	Matrix protein p17		1
132	Y	gap:99.4%	Matrix protein p17		5
133	P	gap:99.4%	Gag-Pol polyprotein		9
134	I	gap:99.4%	Gag-Pol polyprotein		5
135	V	gap:99.4%	Gag-Pol polyprotein		3
136	Q	gap:99.4%	Gag-Pol polyprotein		2
137	N	gap:99.4%	Gag-Pol polyprotein		3
138	I	gap:99.4%	Gag-Pol polyprotein		3
139	Q	gap:99.4%	Gag-Pol polyprotein		3
140	G	gap:99.4%	Gag-Pol polyprotein		2
141	Q	gap:99.4%	Gag-Pol polyprotein		3
142	M	gap:99.4%	Gag-Pol polyprotein		4
144	H	gap:99.4%	Gag-Pol polyprotein		3
145	Q	gap:99.4%	Gag-Pol polyprotein		4
146	A	gap:99.4%	Gag-Pol polyprotein		7
147	I	gap:99.4%	Gag-Pol polyprotein		6
148	S	gap:99.4%	Gag-Pol polyprotein		6
149	P	gap:99.4%	Gag-Pol polyprotein		2
150	R	gap:99.4%	Gag-Pol polyprotein		6
151	T	gap:99.4%	Gag-Pol polyprotein		2
153	N	gap:99.4%	Gag-Pol polyprotein		7
154	A	gap:99.4%	Gag-Pol polyprotein		2
155	W	gap:99.4%	Gag-Pol polyprotein		3
156	V	gap:99.4%	Gag-Pol polyprotein		1
157	K	gap:99.4%	Gag-Pol polyprotein		6
158	V	gap:99.4%	Gag-Pol polyprotein		3
159	V	gap:99.4%	Gag-Pol polyprotein		2
160	E	gap:99.4%	Gag-Pol polyprotein		1
161	E	gap:99.4%	Gag-Pol polyprotein		3
162	K	gap:99.4%	Gag-Pol polyprotein		3
163	A	gap:99.4%	Gag-Pol polyprotein		3
164	F	gap:99.4%	Gag-Pol polyprotein		4
165	S	gap:99.4%	Gag-Pol polyprotein		6
166	P	gap:99.4%	Gag-Pol polyprotein		1
167	E	gap:99.4%	Gag-Pol polyprotein		1
168	V	gap:99.4%	Gag-Pol polyprotein		3
169	I	gap:99.4%	Gag-Pol polyprotein		4
170	P	gap:99.4%	Gag-Pol polyprotein		4
171	M	gap:99.4%	Gag-Pol polyprotein		4
172	F	gap:99.4%	Gag-Pol polyprotein		4
173	S	gap:99.4%	Gag-Pol polyprotein		2
174	A	gap:99.4%	Gag-Pol polyprotein		3
175	L	gap:99.4%	Gag-Pol polyprotein		1
176	S	gap:99.4%	Gag-Pol polyprotein		1
177	E	gap:99.4%	Gag-Pol polyprotein		4
178	G	gap:99.4%	Gag-Pol polyprotein		2
180	T	gap:99.4%	Gag-Pol polyprotein		2
181	P	gap:99.4%	Gag-Pol polyprotein		2
182	Q	gap:99.4%	Gag-Pol polyprotein		6
183	D	gap:99.4%	Gag-Pol polyprotein		4
184	L	gap:99.4%	Gag-Pol polyprotein		4
185	N	gap:99.4%	Gag-Pol polyprotein		2
186	T	gap:99.4%	Gag-Pol polyprotein		7
187	M	gap:99.4%	Gag-Pol polyprotein		1
188	L	gap:99.4%	Gag-Pol polyprotein		3
189	N	gap:99.4%	Gag-Pol polyprotein		5
190	T	gap:99.4%	Gag-Pol polyprotein		3
191	V	gap:99.4%	Gag-Pol polyprotein		4
192	G	gap:99.4%	Gag-Pol polyprotein		2
193	G	gap:99.4%	Gag-Pol polyprotein		1
194	H	gap:99.4%	Gag-Pol polyprotein		6
195	Q	gap:99.4%	Gag-Pol polyprotein		4
197	A	gap:99.4%	Gag-Pol polyprotein		2
198	M	gap:99.4%	Gag-Pol polyprotein		4
199	Q	gap:99.4%	Gag-Pol polyprotein		3
200	M	gap:99.4%	Gag-Pol polyprotein		5
201	L	gap:99.4%	Gag-Pol polyprotein		2
202	K	gap:99.4%	Gag-Pol polyprotein		3
203	E	gap:99.4%	Gag-Pol polyprotein		2
205	I	gap:99.4%	Gag-Pol polyprotein		4
206	N	gap:99.4%	Gag-Pol polyprotein		2
207	E	gap:99.4%	Gag-Pol polyprotein		3
208	E	gap:99.4%	Gag-Pol polyprotein		1
209	A	gap:99.4%	Gag-Pol polyprotein		4
210	A	gap:99.4%	Gag-Pol polyprotein		3
211	E	gap:99.4%	Gag-Pol polyprotein		3
212	W	gap:99.4%	Gag-Pol polyprotein		1
213	D	gap:99.4%	Gag-Pol polyprotein		1
214	R	gap:99.4%	Gag-Pol polyprotein		3
215	V	gap:99.4%	Gag-Pol polyprotein		3
216	H	gap:99.4%	Gag-Pol polyprotein		5
217	P	gap:99.4%	Gag-Pol polyprotein		2
218	V	gap:99.4%	Gag-Pol polyprotein		7
219	H	gap:99.4%	Gag-Pol polyprotein		7
220	A	gap:99.4%	Gag-Pol polyprotein		4
221	G	gap:99.4%	Gag-Pol polyprotein		5
222	P	gap:99.4%	Gag-Pol polyprotein		6
223	I	gap:99.4%	Gag-Pol polyprotein		13
224	A	gap:99.4%	Gag-Pol polyprotein		6
225	P	gap:99.4%	Gag-Pol polyprotein		2
226	G	gap:99.4%	Gag-Pol polyprotein		4
227	Q	gap:99.4%	Gag-Pol polyprotein		3
228	M	gap:99.4%	Gag-Pol polyprotein		4
229	R	gap:99.4%	Gag-Pol polyprotein		2
230	E	gap:99.4%	Gag-Pol polyprotein		3
231	P	gap:99.4%	Gag-Pol polyprotein		2
232	R	gap:99.4%	Gag-Pol polyprotein		5
234	S	gap:99.4%	Gag-Pol polyprotein		2
235	D	gap:99.4%	Gag-Pol polyprotein		1
237	A	gap:99.4%	Gag-Pol polyprotein		4
238	G	gap:99.4%	Gag-Pol polyprotein		1
239	T	gap:99.4%	Gag-Pol polyprotein		4
240	T	gap:99.4%	Gag-Pol polyprotein		2
241	S	gap:99.4%	Gag-Pol polyprotein		4
242	T	gap:99.4%	Gag-Pol polyprotein		6
243	L	gap:99.4%	Gag-Pol polyprotein		5
244	Q	gap:99.4%	Gag-Pol polyprotein		4
245	E	gap:99.4%	Gag-Pol polyprotein		1
247	I	gap:99.4%	Gag-Pol polyprotein		4
248	G	gap:99.4%	Gag-Pol polyprotein		5
249	W	gap:99.4%	Gag-Pol polyprotein		1
250	M	gap:99.4%	Gag-Pol polyprotein		4
251	T	gap:99.4%	Gag-Pol polyprotein		3
252	N	gap:99.4%	Gag-Pol polyprotein		1
253	N	gap:99.4%	Gag-Pol polyprotein		2
254	P	gap:99.4%	Gag-Pol polyprotein		2
255	P	gap:99.4%	Gag-Pol polyprotein		1
256	I	gap:99.4%	Gag-Pol polyprotein		4
257	P	gap:99.4%	Gag-Pol polyprotein		2
258	V	gap:99.4%	Gag-Pol polyprotein		1
260	E	gap:99.4%	Gag-Pol polyprotein		4
261	I	gap:99.4%	Gag-Pol polyprotein		3
262	Y	gap:99.4%	Gag-Pol polyprotein		4
263	K	gap:99.4%	Gag-Pol polyprotein		1
264	R	gap:99.4%	Gag-Pol polyprotein		6
267	I	gap:99.4%	Gag-Pol polyprotein		2
268	L	gap:99.4%	Gag-Pol polyprotein		4
269	G	gap:99.4%	Gag-Pol polyprotein		1
270	L	gap:99.4%	Gag-Pol polyprotein		3
271	N	gap:99.4%	Gag-Pol polyprotein		2
272	K	gap:99.4%	Gag-Pol polyprotein		1
274	V	gap:99.4%	Gag-Pol polyprotein		2
275	R	gap:99.4%	Gag-Pol polyprotein		2
276	M	gap:99.4%	Gag-Pol polyprotein		2
277	Y	gap:99.4%	Gag-Pol polyprotein		3
278	S	gap:99.4%	Gag-Pol polyprotein		5
279	P	gap:99.4%	Gag-Pol polyprotein		4
280	T	gap:99.4%	Gag-Pol polyprotein		7
281	S	gap:99.4%	Gag-Pol polyprotein		6
282	I	gap:99.4%	Gag-Pol polyprotein		2
283	L	gap:99.4%	Gag-Pol polyprotein		3
284	D	gap:99.4%	Gag-Pol polyprotein		1
285	I	gap:99.4%	Gag-Pol polyprotein		2
286	R	gap:99.4%	Gag-Pol polyprotein		5
287	Q	gap:99.4%	Gag-Pol polyprotein		1
288	G	gap:99.4%	Gag-Pol polyprotein		4
289	P	gap:99.4%	Gag-Pol polyprotein		1
290	K	gap:99.4%	Gag-Pol polyprotein		5
291	E	gap:99.4%	Gag-Pol polyprotein		4
292	P	gap:99.4%	Gag-Pol polyprotein		1
293	F	gap:99.4%	Gag-Pol polyprotein		4
294	R	gap:99.4%	Gag-Pol polyprotein		1
295	D	gap:99.4%	Gag-Pol polyprotein		3
296	Y	gap:99.4%	Gag-Pol polyprotein		2
297	V	gap:99.4%	Gag-Pol polyprotein		3
298	D	gap:99.4%	Gag-Pol polyprotein		2
299	R	gap:99.4%	Gag-Pol polyprotein		3
300	F	gap:99.4%	Gag-Pol polyprotein		2
301	Y	gap:99.4%	Gag-Pol polyprotein		6
302	K	gap:99.4%	Gag-Pol polyprotein		2
303	T	gap:99.4%	Gag-Pol polyprotein		4
304	L	gap:99.4%	Gag-Pol polyprotein		3
305	R	gap:99.4%	Gag-Pol polyprotein		4
307	E	gap:99.4%	Gag-Pol polyprotein		1
308	Q	gap:99.4%	Gag-Pol polyprotein		1
309	A	gap:99.4%	Gag-Pol polyprotein		2
310	S	gap:99.4%	Gag-Pol polyprotein		5
311	Q	gap:99.4%	Gag-Pol polyprotein		1
312	E	gap:99.4%	Gag-Pol polyprotein		6
313	V	gap:99.4%	Gag-Pol polyprotein		2
314	K	gap:99.4%	Gag-Pol polyprotein		3
315	N	gap:99.4%	Gag-Pol polyprotein		2
316	W	gap:99.4%	Gag-Pol polyprotein		4
317	M	gap:99.4%	Gag-Pol polyprotein		2
318	T	gap:99.4%	Gag-Pol polyprotein		1
319	E	gap:99.4%	Gag-Pol polyprotein		7
320	T	gap:99.4%	Gag-Pol polyprotein		1
321	L	gap:99.4%	Gag-Pol polyprotein		1
322	L	gap:99.4%	Gag-Pol polyprotein		4
323	V	gap:99.4%	Gag-Pol polyprotein		1
324	Q	gap:99.4%	Gag-Pol polyprotein		3
325	N	gap:99.4%	Gag-Pol polyprotein		2
326	A	gap:99.4%	Gag-Pol polyprotein		3
327	N	gap:99.4%	Gag-Pol polyprotein		3
329	D	gap:99.4%	Gag-Pol polyprotein		3
330	C	gap:99.4%	Gag-Pol polyprotein		2
331	K	gap:99.4%	Gag-Pol polyprotein		3
332	T	gap:99.4%	Gag-Pol polyprotein		3
333	I	gap:99.4%	Gag-Pol polyprotein		3
334	L	gap:99.4%	Gag-Pol polyprotein		2
335	K	gap:99.4%	Gag-Pol polyprotein		3
336	A	gap:99.4%	Gag-Pol polyprotein		2
337	L	gap:99.4%	Gag-Pol polyprotein		1
339	P	gap:99.4%	Gag-Pol polyprotein		3
340	A	gap:99.4%	Gag-Pol polyprotein		1
342	T	gap:99.4%	Gag-Pol polyprotein		3
343	L	gap:99.4%	Gag-Pol polyprotein		3
344	E	gap:99.4%	Gag-Pol polyprotein		2
345	E	gap:99.4%	Gag-Pol polyprotein		3
346	M	gap:99.4%	Gag-Pol polyprotein		2
347	M	gap:99.4%	Gag-Pol polyprotein		2
348	T	gap:99.4%	Gag-Pol polyprotein		3
349	A	gap:99.4%	Gag-Pol polyprotein		2
350	C	gap:99.4%	Gag-Pol polyprotein		3
351	Q	gap:99.4%	Gag-Pol polyprotein		3
352	G	gap:99.4%	Gag-Pol polyprotein		1
353	V	gap:99.4%	Gag-Pol polyprotein		2
354	G	gap:99.4%	Gag-Pol polyprotein		1
355	G	gap:99.4%	Gag-Pol polyprotein		2
356	P	gap:99.4%	Gag-Pol polyprotein		1
357	G	gap:99.4%	Gag-Pol polyprotein		6
358	H	gap:99.4%	Gag-Pol polyprotein		2
359	K	gap:99.4%	Gag-Pol polyprotein		4
360	A	gap:99.4%	Gag-Pol polyprotein		1
361	R	gap:99.4%	Gag-Pol polyprotein		1
362	V	gap:99.4%	Gag-Pol polyprotein		3
363	L	gap:99.4%	Gag-Pol polyprotein		8
364	A	gap:99.4%	Gag-Pol polyprotein		1
366	A	gap:99.4%	Gag-Pol polyprotein		3
367	M	gap:99.4%	Gag-Pol polyprotein		10
368	S	gap:99.4%	Gag-Pol polyprotein		1
369	Q	gap:99.4%	Gag-Pol polyprotein		1
370	V	gap:99.4%	Gag-Pol polyprotein		3
372	N	gap:99.4%	Gag-Pol polyprotein		1
373	S	gap:99.4%	Gag-Pol polyprotein		3
374	A	gap:99.4%	Gag-Pol polyprotein		7
375	T	gap:99.4%	Gag-Pol polyprotein		3
376	I	gap:99.4%	Gag-Pol polyprotein		1
377	M	gap:99.4%	Gag-Pol polyprotein		3
378	M	gap:99.4%	Nucleocapsid protein p7		3
379	Q	gap:99.4%	Nucleocapsid protein p7		1
380	R	gap:99.4%	Nucleocapsid protein p7		4
381	G	gap:99.4%	Nucleocapsid protein p7		1
382	N	gap:99.4%	Nucleocapsid protein p7		2
383	F	gap:99.4%	Nucleocapsid protein p7		2
384	R	gap:99.4%	Nucleocapsid protein p7		5
387	R	gap:99.4%	Nucleocapsid protein p7		4
388	K	gap:99.4%	Nucleocapsid protein p7		1
389	I	gap:99.4%	Nucleocapsid protein p7		1
390	V	gap:99.4%	Nucleocapsid protein p7		4
391	K	gap:99.4%	Nucleocapsid protein p7		2
392	C	gap:99.4%	Nucleocapsid protein p7		2
393	F	gap:99.4%	Nucleocapsid protein p7	STRAND	4
394	N	gap:99.4%	Nucleocapsid protein p7	STRAND	7
395	C	gap:99.4%	Nucleocapsid protein p7	STRAND	2
396	G	gap:99.4%	Nucleocapsid protein p7		2
397	K	gap:99.4%	Nucleocapsid protein p7		4
398	E	gap:99.4%	Nucleocapsid protein p7		3
399	G	gap:99.4%	Nucleocapsid protein p7		1
400	H	gap:99.4%	Nucleocapsid protein p7		2
401	T	gap:99.4%	Nucleocapsid protein p7		2
402	A	gap:99.4%	Nucleocapsid protein p7	TURN	2
403	R	gap:99.4%	Nucleocapsid protein p7	TURN	1
404	N	gap:99.4%	Nucleocapsid protein p7	TURN	3
405	C	gap:99.4%	Nucleocapsid protein p7		2
406	R	gap:99.4%	Nucleocapsid protein p7		3
407	A	gap:99.4%	Nucleocapsid protein p7		1
408	P	gap:99.4%	Nucleocapsid protein p7		2
409	R	gap:99.4%	Nucleocapsid protein p7		3
410	K	gap:99.4%	Nucleocapsid protein p7		1
411	K	gap:99.4%	Nucleocapsid protein p7		1
412	G	gap:99.4%	Nucleocapsid protein p7		1
413	C	gap:99.4%	Nucleocapsid protein p7		1
414	W	gap:99.4%	Nucleocapsid protein p7	STRAND	3
415	K	gap:99.4%	Nucleocapsid protein p7	STRAND	1
416	C	gap:99.4%	Nucleocapsid protein p7	STRAND	2
417	G	gap:99.4%	Nucleocapsid protein p7		2
418	K	gap:99.4%	Nucleocapsid protein p7		2
419	E	gap:99.4%	Nucleocapsid protein p7		3
420	G	gap:99.4%	Nucleocapsid protein p7		1
421	H	gap:99.4%	Nucleocapsid protein p7		2
422	Q	gap:99.4%	Nucleocapsid protein p7		1
423	M	gap:99.4%	Nucleocapsid protein p7	TURN	4
425	D	gap:99.4%	Nucleocapsid protein p7	TURN	3
426	C	gap:99.4%	Nucleocapsid protein p7		2
427	T	gap:99.4%	Nucleocapsid protein p7		2
428	E	gap:99.4%	Nucleocapsid protein p7		2
429	R	gap:99.4%	Nucleocapsid protein p7		1
430	Q	gap:99.4%	Nucleocapsid protein p7		1
431	A	gap:99.4%	Nucleocapsid protein p7		2
432	N	gap:99.4%	Nucleocapsid protein p7		4
436	E	E:95.9%	Gag-Pol polyprotein		1
437	D	N:74.1%,other:25.9%	Gag-Pol polyprotein		3
440	F	F:87.1%	Gag-Pol polyprotein		4
445	A	A:97.1%	p6-pol		1
448	F	F:64.1%,L:35.3%	p6-pol		1
455	A	A:87.6%	p6-pol		1
458	P	P:95.3%	p6-pol		1
462	E	E:82.4%	p6-pol		1
479	D	E:78.8%,other:21.2%	p6-pol		1
480	R	G:37.6%,R:46.5%	p6-pol		1
489	P	P:100.0%	Protease		6
490	Q	Q:99.4%	Protease		5
491	V	I:98.8%	Protease		8
492	T	T:96.5%	Protease		4
493	L	L:98.8%	Protease	STRAND	4
494	W	W:100.0%	Protease	STRAND	2
495	Q	Q:95.3%	Protease	STRAND	5
496	R	R:99.4%	Protease		5
497	P	P:100.0%	Protease		2
498	L	L:71.8%,other:28.2%	Protease	STRAND	10
499	V	V:92.9%	Protease	STRAND	5
500	T	T:84.1%	Protease	STRAND	10
501	I	I:45.9%,V:51.8%	Protease	STRAND	3
502	K	K:74.1%,R:23.5%	Protease	STRAND	4
503	I	I:70.6%,V:28.2%	Protease	STRAND	4
504	G	G:81.8%	Protease		2
505	G	G:92.9%	Protease		4
506	Q	Q:95.3%	Protease	STRAND	5
507	L	L:84.7%	Protease	STRAND	6
508	K	K:51.2%,I:21.8%,R:21.2%	Protease	STRAND	11
509	E	E:99.4%	Protease	STRAND	5
510	A	A:98.2%	Protease	STRAND	2
511	L	L:99.4%	Protease	STRAND	6
512	L	L:99.4%	Protease	STRAND	6
513	D	D:99.4%	Protease		8
514	T	T:99.4%	Protease		6
515	G	G:100.0%	Protease		2
516	A	A:100.0%	Protease	STRAND	2
517	D	D:100.0%	Protease	STRAND	7
518	D	D:97.6%	Protease	STRAND	7
519	T	T:98.8%	Protease		2
520	V	V:100.0%	Protease	STRAND	8
521	L	L:94.7%	Protease	STRAND	8
522	E	E:94.7%	Protease	STRAND	7
523	E	D:53.5%,E:38.2%	Protease	STRAND	6
524	M	I:81.8%	Protease		9
525	S	N:71.2%,other:28.8%	Protease		6
526	L	L:98.8%	Protease		5
527	P	P:88.8%	Protease		5
528	G	G:98.8%	Protease		2
529	R	K:84.1%	Protease		7
531	K	K:90.6%	Protease	STRAND	7
532	P	P:100.0%	Protease	STRAND	1
533	K	K:96.5%	Protease	STRAND	10
534	M	M:96.5%	Protease	STRAND	6
535	I	I:98.8%	Protease	STRAND	7
536	G	G:100.0%	Protease	STRAND	14
537	G	G:100.0%	Protease	STRAND	5
538	I	I:100.0%	Protease		8
539	G	G:99.4%	Protease		4
540	G	G:99.4%	Protease	STRAND	4
541	F	F:99.4%	Protease	STRAND	7
542	I	I:98.2%	Protease	STRAND	9
543	K	K:98.8%	Protease	STRAND	5
544	V	V:100.0%	Protease	STRAND	4
545	R	K:28.2%,R:71.2%	Protease	STRAND	5
546	Q	Q:95.9%	Protease	STRAND	3
547	Y	Y:98.8%	Protease	STRAND	1
548	D	D:80.6%	Protease	STRAND	6
549	Q	Q:67.6%,other:32.4%	Protease	STRAND	5
550	I	I:82.4%	Protease	STRAND	3
551	L	P:25.9%,L:46.5%,other:27.6%	Protease	STRAND	14
552	I	I:86.5%	Protease	STRAND	5
553	E	E:91.8%	Protease	STRAND	5
554	I	I:98.2%	Protease	STRAND	3
555	C	C:78.2%,other:21.8%	Protease		9
556	G	G:97.6%	Protease		4
557	H	K:55.9%,H:24.7%	Protease	STRAND	11
558	K	K:84.7%	Protease	STRAND	9
559	A	A:92.9%	Protease	STRAND	5
560	I	I:85.9%	Protease	STRAND	8
561	G	G:98.2%	Protease	STRAND	9
562	T	T:98.2%	Protease	STRAND	8
563	V	V:99.4%	Protease	STRAND	6
564	L	L:100.0%	Protease	STRAND	6
565	V	V:92.9%	Protease	STRAND	7
566	G	G:99.4%	Protease	STRAND	1
567	P	P:99.4%	Protease		5
568	T	T:99.4%	Protease		7
569	P	P:100.0%	Protease		4
570	V	V:84.7%	Protease		15
571	N	N:100.0%	Protease		4
572	I	I:100.0%	Protease		10
573	I	I:96.5%	Protease		3
574	G	G:99.4%	Protease		4
575	R	R:100.0%	Protease	HELIX	6
576	N	N:97.6%	Protease	HELIX	7
577	L	L:30.6%,M:58.2%	Protease	HELIX	5
578	L	L:98.8%	Protease	HELIX	6
579	T	T:95.3%	Protease	TURN	4
580	Q	Q:95.3%	Protease	TURN	7
581	I	I:72.9%,L:25.9%	Protease	TURN	11
582	G	G:99.4%	Protease	TURN	6
583	C	C:98.8%	Protease		7
584	T	T:100.0%	Protease	STRAND	4
585	L	L:100.0%	Protease	STRAND	6
586	N	N:98.2%	Protease	STRAND	9
587	F	F:96.5%	Protease		6
588	P	P:99.4%	p51 RT		5
590	S	S:100.0%	p51 RT		10
591	P	P:97.1%	p51 RT		4
592	I	I:97.6%	p51 RT		1
593	E	E:83.5%	p51 RT		2
594	T	T:97.1%	p51 RT	STRAND	2
595	V	V:97.6%	p51 RT	STRAND	1
596	P	P:99.4%	p51 RT	STRAND	2
597	V	V:100.0%	p51 RT	STRAND	1
598	K	K:87.6%	p51 RT	STRAND	3
599	L	L:100.0%	p51 RT	STRAND	2
600	K	K:100.0%	p51 RT		4
602	G	G:100.0%	p51 RT	STRAND	2
603	M	M:100.0%	p51 RT	STRAND	2
604	D	D:100.0%	p51 RT	STRAND	3
605	G	G:98.2%	p51 RT	STRAND	3
606	P	P:100.0%	p51 RT	STRAND	1
607	K	K:87.6%	p51 RT	STRAND	6
608	V	V:92.9%	p51 RT		1
609	K	K:98.8%	p51 RT		2
610	Q	Q:100.0%	p51 RT	STRAND	2
611	W	W:100.0%	p51 RT	STRAND	1
613	L	L:100.0%	p51 RT	STRAND	2
614	T	T:94.7%	p51 RT	STRAND	3
615	E	E:90.6%	p51 RT	STRAND	5
616	E	E:99.4%	p51 RT	STRAND	3
617	K	K:99.4%	p51 RT		3
618	I	I:100.0%	p51 RT		3
619	K	K:91.8%	p51 RT		1
620	A	A:99.4%	p51 RT		2
622	V	T:71.8%,other:28.2%	p51 RT		7
623	E	E:85.3%	p51 RT		6
624	I	I:100.0%	p51 RT		6
625	C	C:100.0%	p51 RT		2
626	T	T:51.8%,other:48.2%	p51 RT		8
627	E	E:85.9%	p51 RT		6
628	M	M:93.5%	p51 RT		8
629	E	E:100.0%	p51 RT		1
630	K	K:82.4%	p51 RT		7
631	E	E:98.2%	p51 RT		4
632	G	G:99.4%	p51 RT		1
633	K	K:100.0%	p51 RT		1
634	I	I:100.0%	p51 RT		5
635	S	S:92.9%	p51 RT	STRAND	4
636	K	K:77.6%,R:22.4%	p51 RT	STRAND	1
637	I	I:96.5%	p51 RT	STRAND	4
638	G	G:98.8%	p51 RT	STRAND	1
639	P	P:99.4%	p51 RT	STRAND	3
640	E	E:97.1%	p51 RT	STRAND	2
641	N	N:99.4%	p51 RT	STRAND	1
642	P	P:100.0%	p51 RT		5
643	Y	Y:100.0%	p51 RT		3
644	N	N:99.4%	p51 RT	STRAND	2
645	T	T:99.4%	p51 RT	STRAND	4
647	V	I:47.1%,V:52.9%	p51 RT	STRAND	4
648	F	F:100.0%	p51 RT	STRAND	7
649	A	A:100.0%	p51 RT	STRAND	2
650	I	I:100.0%	p51 RT	STRAND	5
651	K	K:97.6%	p51 RT	STRAND	6
652	K	K:100.0%	p51 RT	STRAND	8
653	K	K:100.0%	p51 RT	STRAND	3
654	D	D:94.1%	p51 RT	STRAND	10
655	S	S:96.5%	p51 RT	STRAND	7
656	T	T:95.9%	p51 RT	STRAND	13
657	K	K:92.9%	p51 RT	STRAND	12
658	W	W:100.0%	p51 RT	STRAND	7
659	R	R:99.4%	p51 RT		7
660	K	K:98.8%	p51 RT		8
661	L	L:97.1%	p51 RT	STRAND	12
662	V	V:98.2%	p51 RT	STRAND	9
663	D	D:98.8%	p51 RT	STRAND	7
664	F	F:98.8%	p51 RT	STRAND	8
665	R	R:98.2%	p51 RT	STRAND	12
666	E	E:99.4%	p51 RT	STRAND	4
667	L	L:100.0%	p51 RT	STRAND	4
668	N	N:100.0%	p51 RT	STRAND	1
669	K	K:98.2%	p51 RT	STRAND	2
670	R	R:96.5%	p51 RT	STRAND	2
673	D	D:98.2%	p51 RT		4
674	F	F:99.4%	p51 RT		3
675	W	W:100.0%	p51 RT		4
676	E	E:99.4%	p51 RT		9
677	V	V:97.6%	p51 RT		7
678	Q	Q:98.8%	p51 RT		3
679	L	L:100.0%	p51 RT	HELIX	5
680	G	G:99.4%	p51 RT	HELIX	2
681	I	I:100.0%	p51 RT	HELIX	4
682	P	P:100.0%	p51 RT	HELIX	2
683	H	H:100.0%	p51 RT	TURN	2
685	A	A:91.8%	p51 RT	TURN	6
686	G	G:99.4%	p51 RT	TURN	2
687	L	L:98.2%	p51 RT		8
688	K	K:97.6%	p51 RT		9
689	K	K:92.4%	p51 RT		6
690	K	K:94.7%	p51 RT		15
691	K	K:90.6%	p51 RT	STRAND	5
692	S	S:99.4%	p51 RT	STRAND	6
693	V	V:98.8%	p51 RT	STRAND	9
694	T	T:97.6%	p51 RT	STRAND	4
695	V	V:98.8%	p51 RT	STRAND	7
696	L	L:99.4%	p51 RT	STRAND	4
697	D	D:99.4%	p51 RT	STRAND	7
698	V	V:100.0%	p51 RT		3
699	G	G:98.8%	p51 RT	HELIX	2
700	D	D:98.8%	p51 RT	HELIX	6
701	A	A:100.0%	p51 RT	HELIX	10
702	Y	Y:100.0%	p51 RT	TURN	16
703	F	F:99.4%	p51 RT	TURN	9
704	S	S:100.0%	p51 RT	TURN	2
705	V	V:90.6%	p51 RT		8
706	P	P:100.0%	p51 RT		1
707	L	L:99.4%	p51 RT		3
708	D	D:82.9%	p51 RT		7
709	E	K:37.1%,E:52.4%	p51 RT		1
710	D	D:50.6%,E:22.4%,other:27.1%	p51 RT		7
711	F	F:100.0%	p51 RT	HELIX	2
712	R	R:98.8%	p51 RT	HELIX	2
714	Y	Y:98.8%	p51 RT	HELIX	4
715	T	T:100.0%	p51 RT	HELIX	5
716	A	A:100.0%	p51 RT		3
717	F	F:99.4%	p51 RT	STRAND	2
718	T	T:100.0%	p51 RT	STRAND	2
719	I	I:99.4%	p51 RT	STRAND	4
720	P	P:99.4%	p51 RT		3
721	S	S:99.4%	p51 RT		6
722	I	I:45.9%,T:25.3%,other:28.8%	p51 RT		8
723	N	N:100.0%	p51 RT		2
724	N	N:100.0%	p51 RT		9
725	E	E:98.8%	p51 RT		10
726	T	T:99.4%	p51 RT		7
727	P	P:100.0%	p51 RT		1
728	G	G:97.6%	p51 RT		2
729	I	I:87.6%	p51 RT	STRAND	3
730	R	R:98.8%	p51 RT	STRAND	3
731	Y	Y:100.0%	p51 RT	STRAND	2
732	Q	Q:97.1%	p51 RT	STRAND	10
733	Y	Y:98.8%	p51 RT	STRAND	5
735	V	V:99.4%	p51 RT	STRAND	6
736	L	L:98.8%	p51 RT		4
737	P	P:100.0%	p51 RT		5
738	Q	Q:100.0%	p51 RT		13
739	G	G:100.0%	p51 RT		3
740	W	W:100.0%	p51 RT		5
741	K	K:99.4%	p51 RT		7
742	G	G:100.0%	p51 RT		4
743	S	S:100.0%	p51 RT	HELIX	7
744	P	P:100.0%	p51 RT	HELIX	4
745	A	A:97.1%	p51 RT	HELIX	4
746	I	I:100.0%	p51 RT	HELIX	2
747	F	F:98.8%	p51 RT	HELIX	5
748	Q	Q:100.0%	p51 RT	HELIX	5
749	S	C:22.9%,S:67.1%	p51 RT	HELIX	8
750	S	S:98.2%	p51 RT	HELIX	4
751	M	M:99.4%	p51 RT	HELIX	3
752	T	T:95.9%	p51 RT	HELIX	6
753	K	K:94.7%	p51 RT	HELIX	4
754	I	I:100.0%	p51 RT	HELIX	5
755	L	L:99.4%	p51 RT	HELIX	1
756	E	E:85.3%	p51 RT	HELIX	4
757	P	P:100.0%	p51 RT	HELIX	2
758	F	F:96.5%	p51 RT	HELIX	3
759	R	R:97.1%	p51 RT	HELIX	1
760	K	K:47.1%,other:52.9%	p51 RT	HELIX	11
761	Q	Q:48.2%,K:38.8%	p51 RT	HELIX	6
762	N	N:96.5%	p51 RT		3
763	P	P:98.8%	p51 RT		2
764	D	D:26.5%,E:70.0%	p51 RT		5
765	I	I:69.4%,other:30.6%	p51 RT	STRAND	4
766	V	V:83.5%	p51 RT	STRAND	11
767	I	I:98.2%	p51 RT	STRAND	4
768	Y	Y:96.5%	p51 RT	STRAND	12
769	Q	Q:98.8%	p51 RT	STRAND	2
770	Y	Y:99.4%	p51 RT	STRAND	6
771	M	M:94.1%	p51 RT		12
772	D	D:100.0%	p51 RT		8
773	D	D:98.8%	p51 RT	STRAND	7
774	L	L:99.4%	p51 RT	STRAND	6
775	Y	Y:99.4%	p51 RT	STRAND	11
776	V	V:98.8%	p51 RT	STRAND	3
777	G	G:97.1%	p51 RT	STRAND	10
778	S	S:100.0%	p51 RT	STRAND	4
779	D	D:100.0%	p51 RT		2
780	L	L:98.2%	p51 RT		1
781	E	E:94.1%	p51 RT		4
782	I	I:92.4%	p51 RT	HELIX	5
783	G	G:85.3%	p51 RT	HELIX	4
784	Q	Q:93.5%	p51 RT	HELIX	3
785	H	H:98.8%	p51 RT	HELIX	4
786	R	R:98.8%	p51 RT	HELIX	7
787	T	T:42.9%,A:35.9%,other:21.2%	p51 RT	HELIX	6
788	K	K:91.8%	p51 RT	HELIX	1
789	I	I:87.1%	p51 RT	HELIX	2
790	E	E:95.3%	p51 RT	HELIX	5
791	E	E:91.8%	p51 RT	HELIX	3
792	L	L:99.4%	p51 RT	HELIX	4
793	R	R:99.4%	p51 RT	HELIX	3
794	Q	Q:24.1%,E:40.6%,other:35.3%	p51 RT	HELIX	9
795	H	H:98.2%	p51 RT	HELIX	5
796	L	L:98.8%	p51 RT	HELIX	1
797	L	L:93.5%	p51 RT	HELIX	9
798	R	K:45.9%,R:35.9%	p51 RT	HELIX	9
799	W	W:100.0%	p51 RT		2
800	G	G:99.4%	p51 RT		1
801	L	F:90.6%	p51 RT		5
802	T	T:90.0%	p51 RT		17
803	T	T:98.8%	p51 RT		3
805	D	D:98.8%	p51 RT		5
806	K	K:95.9%	p51 RT	HELIX	15
807	K	K:98.8%	p51 RT	HELIX	4
808	H	H:99.4%	p51 RT	HELIX	6
810	K	K:98.2%	p51 RT		4
811	E	E:99.4%	p51 RT		4
812	P	P:100.0%	p51 RT	STRAND	5
813	P	P:100.0%	p51 RT	STRAND	3
814	F	F:99.4%	p51 RT	STRAND	9
815	L	L:95.3%	p51 RT	STRAND	8
816	W	W:100.0%	p51 RT	STRAND	6
817	M	M:100.0%	p51 RT		10
818	G	G:99.4%	p51 RT		1
819	Y	Y:99.4%	p51 RT	STRAND	4
820	E	E:99.4%	p51 RT	STRAND	3
821	L	L:100.0%	p51 RT	STRAND	8
822	H	H:100.0%	p51 RT	STRAND	4
823	P	P:100.0%	p51 RT		7
824	D	D:99.4%	p51 RT		3
825	K	K:95.9%	p51 RT	STRAND	5
826	W	W:100.0%	p51 RT	STRAND	1
828	V	V:99.4%	p51 RT	STRAND	4
829	Q	Q:99.4%	p51 RT		4
830	P	P:91.8%	p51 RT		2
831	I	I:95.3%	p51 RT		2
832	V	Q:45.9%,other:54.1%	p51 RT		8
833	L	L:99.4%	p51 RT		2
835	E	D:22.4%,E:66.5%	p51 RT		2
836	K	K:97.1%	p51 RT		3
837	D	D:58.8%,E:38.2%	p51 RT	STRAND	3
838	S	S:80.6%	p51 RT	STRAND	3
839	W	W:99.4%	p51 RT	STRAND	1
840	T	T:99.4%	p51 RT	STRAND	2
841	V	V:99.4%	p51 RT	HELIX	3
842	N	N:98.8%	p51 RT	HELIX	2
843	D	D:99.4%	p51 RT	HELIX	2
844	I	I:99.4%	p51 RT	HELIX	5
845	Q	Q:97.6%	p51 RT	HELIX	3
846	K	K:98.8%	p51 RT	HELIX	4
847	L	L:99.4%	p51 RT	HELIX	2
848	V	V:98.8%	p51 RT	HELIX	3
849	G	G:98.8%	p51 RT	HELIX	4
850	K	K:99.4%	p51 RT	HELIX	4
851	L	L:99.4%	p51 RT	HELIX	2
852	N	N:100.0%	p51 RT	HELIX	3
853	W	W:100.0%	p51 RT	HELIX	11
854	A	A:100.0%	p51 RT	HELIX	2
855	S	S:100.0%	p51 RT	TURN	1
856	Q	Q:99.4%	p51 RT	TURN	1
857	I	I:100.0%	p51 RT	TURN	1
858	Y	Y:98.8%	p51 RT		4
859	P	P:72.4%,A:20.6%	p51 RT		5
860	G	G:98.8%	p51 RT		2
861	I	I:98.2%	p51 RT		3
862	K	K:85.9%	p51 RT		3
863	V	V:92.9%	p51 RT		3
864	R	K:65.9%,R:33.5%	p51 RT	HELIX	2
865	Q	Q:91.2%	p51 RT	HELIX	3
866	L	L:99.4%	p51 RT	HELIX	2
867	C	C:99.4%	p51 RT	HELIX	14
868	K	K:81.2%	p51 RT	HELIX	3
869	L	L:99.4%	p51 RT	TURN	2
870	L	L:88.8%	p51 RT	TURN	2
871	R	R:98.2%	p51 RT	TURN	2
872	G	G:100.0%	p51 RT	TURN	2
873	T	T:37.1%,A:58.8%	p51 RT		3
874	K	K:97.6%	p51 RT		2
875	A	A:93.5%	p51 RT		3
876	L	L:100.0%	p51 RT		5
877	T	T:100.0%	p51 RT		1
878	E	D:62.9%,E:37.1%	p51 RT		2
879	V	I:59.4%,V:39.4%	p51 RT		1
880	I	V:83.5%	p51 RT		1
881	P	P:80.6%	p51 RT		5
882	L	L:93.5%	p51 RT		2
883	T	T:97.1%	p51 RT		1
884	E	A:24.1%,E:39.4%,other:36.5%	p51 RT	HELIX	6
885	E	E:100.0%	p51 RT	HELIX	1
886	A	A:99.4%	p51 RT	HELIX	1
887	E	E:98.8%	p51 RT	HELIX	4
888	L	L:97.6%	p51 RT	HELIX	2
889	E	E:100.0%	p51 RT	HELIX	5
890	L	L:98.8%	p51 RT	HELIX	3
891	A	A:91.8%	p51 RT	HELIX	2
893	N	N:100.0%	p51 RT	HELIX	1
894	R	R:95.3%	p51 RT	HELIX	3
897	L	L:98.2%	p51 RT		1
898	K	K:91.8%	p51 RT		3
899	E	E:82.4%	p51 RT		7
900	P	P:95.9%	p51 RT		4
901	V	V:97.1%	p51 RT		4
902	H	H:98.8%	p51 RT		1
903	G	G:100.0%	p51 RT		1
904	V	V:86.5%	p51 RT		1
905	Y	Y:98.8%	p51 RT		9
906	Y	Y:99.4%	p51 RT		2
907	D	D:92.4%	p51 RT		3
909	S	S:80.0%	p51 RT		1
910	K	K:99.4%	p51 RT		1
911	D	D:74.1%,E:22.9%	p51 RT		1
913	I	I:80.0%	p51 RT	STRAND	2
914	A	A:94.7%	p51 RT	STRAND	1
915	E	E:94.1%	p51 RT	STRAND	2
916	I	I:70.6%,V:25.3%	p51 RT	STRAND	3
918	K	K:100.0%	p51 RT	STRAND	1
920	G	G:98.2%	p51 RT	STRAND	5
921	Q	Q:66.5%,other:33.5%	p51 RT		5
922	G	D:52.4%,G:40.0%	p51 RT		4
925	T	T:98.8%	p51 RT	STRAND	2
926	Y	Y:98.8%	p51 RT	STRAND	1
928	I	I:97.1%	p51 RT	STRAND	1
932	P	P:92.4%	p51 RT		1
933	F	F:74.1%,other:25.9%	p51 RT		2
935	N	N:98.2%	p51 RT	STRAND	4
936	L	L:99.4%	p51 RT	STRAND	1
938	T	T:99.4%	p51 RT	STRAND	1
940	K	K:99.4%	p51 RT	STRAND	1
942	A	A:97.1%	p51 RT	STRAND	2
943	R	K:58.2%,R:41.8%	p51 RT		1
944	M	R:25.9%,M:31.8%,other:42.4%	p51 RT		6
945	R	R:72.4%,other:27.6%	p51 RT		1
946	G	S:54.1%,G:24.1%,other:21.8%	p51 RT		3
947	A	A:86.5%	p51 RT	STRAND	6
948	H	H:99.4%	p51 RT	STRAND	1
949	T	T:100.0%	p51 RT	STRAND	1
950	N	N:99.4%	p51 RT		1
951	D	D:99.4%	p51 RT	HELIX	1
952	V	V:85.9%	p51 RT	HELIX	2
953	K	K:71.8%,R:27.6%	p51 RT	HELIX	1
955	L	L:99.4%	p51 RT	HELIX	1
956	T	T:79.4%,other:20.6%	p51 RT	HELIX	3
957	E	E:94.1%	p51 RT	HELIX	1
958	A	A:54.1%,V:43.5%	p51 RT	HELIX	2
959	V	V:96.5%	p51 RT	HELIX	1
960	Q	Q:99.4%	p51 RT	HELIX	1
961	K	K:97.6%	p51 RT	HELIX	1
962	I	I:74.1%,V:25.9%	p51 RT	HELIX	1
963	T	A:67.1%,other:32.9%	p51 RT	HELIX	2
964	T	T:52.9%,other:47.1%	p51 RT	HELIX	4
968	V	V:95.9%	p51 RT	HELIX	1
969	I	I:98.8%	p51 RT	HELIX	2
971	G	G:100.0%	p51 RT		1
973	T	I:22.9%,T:65.9%	p51 RT		3
977	K	K:35.9%,R:62.9%	p51 RT	STRAND	2
980	I	I:94.1%	p51 RT	STRAND	2
981	Q	Q:81.2%	p51 RT		2
982	K	K:82.4%	p51 RT	HELIX	2
983	E	E:98.2%	p51 RT	HELIX	3
984	T	T:95.9%	p51 RT	HELIX	1
985	W	W:99.4%	p51 RT	HELIX	3
986	E	E:78.8%,other:21.2%	p51 RT	HELIX	2
987	T	T:70.6%,other:29.4%	p51 RT	HELIX	2
988	W	W:100.0%	p51 RT	HELIX	3
989	W	W:100.0%	p51 RT	HELIX	4
990	T	T:63.5%,M:21.8%	p51 RT	HELIX	3
991	E	D:28.2%,E:70.6%	p51 RT	HELIX	4
992	Y	Y:94.1%	p51 RT		2
993	W	W:100.0%	p51 RT	STRAND	3
994	Q	Q:99.4%	p51 RT	STRAND	1
995	A	A:99.4%	p51 RT	STRAND	1
996	T	T:98.2%	p51 RT		2
997	W	W:98.8%	p51 RT		2
999	P	P:100.0%	p51 RT		1
1001	W	W:99.4%	p51 RT	STRAND	2
1002	E	E:99.4%	p51 RT	STRAND	1
1003	F	F:99.4%	p51 RT	STRAND	3
1004	V	V:97.1%	p51 RT		1
1005	N	N:94.7%	p51 RT		2
1006	T	T:98.8%	p51 RT		1
1007	P	P:99.4%	p51 RT		2
1008	P	P:95.9%	p51 RT		3
1009	L	L:98.2%	p51 RT		2
1010	V	V:96.5%	p51 RT		1
1011	K	K:98.2%	p51 RT		1
1014	Y	Y:100.0%	p51 RT		3
1015	Q	Q:92.9%	p51 RT		1
1016	L	L:100.0%	p51 RT		1
1017	E	E:98.8%	p51 RT		2
1018	K	K:55.3%,T:37.6%	p51 RT		1
1019	E	D:27.6%,E:71.8%	p51 RT		2
1020	P	P:98.8%	p51 RT		1
1022	V	A:25.3%,V:36.5%,other:38.2%	p51 RT		2
1023	G	G:94.7%	p51 RT		3
1024	A	A:94.1%	p51 RT	STRAND	4
1025	E	E:97.1%	p51 RT	STRAND	2
1026	T	T:99.4%	p51 RT	STRAND	1
1027	F	F:87.1%	p51 RT	STRAND	4
1028	Y	Y:100.0%	Reverse transcriptase/ribonuclease H	STRAND	3
1029	V	V:98.8%	Reverse transcriptase/ribonuclease H	STRAND	3
1030	D	D:100.0%	Reverse transcriptase/ribonuclease H	STRAND	4
1032	A	A:100.0%	Reverse transcriptase/ribonuclease H	STRAND	1
1033	A	A:85.9%	Reverse transcriptase/ribonuclease H	STRAND	3
1034	N	N:88.8%	Reverse transcriptase/ribonuclease H	STRAND	1
1035	R	R:98.2%	Reverse transcriptase/ribonuclease H	TURN	1
1038	K	K:96.5%	Reverse transcriptase/ribonuclease H	TURN	1
1039	L	L:57.1%,other:42.9%	Reverse transcriptase/ribonuclease H	STRAND	2
1042	A	A:100.0%	Reverse transcriptase/ribonuclease H	STRAND	2
1046	T	T:99.4%	Reverse transcriptase/ribonuclease H	STRAND	1
1047	N	D:89.4%	Reverse transcriptase/ribonuclease H		1
1048	R	K:25.9%,R:72.4%	Reverse transcriptase/ribonuclease H		1
1049	G	G:100.0%	Reverse transcriptase/ribonuclease H		1
1050	R	R:84.1%	Reverse transcriptase/ribonuclease H		1
1053	V	I:22.4%,V:62.4%	Reverse transcriptase/ribonuclease H	STRAND	3
1054	V	V:82.9%	Reverse transcriptase/ribonuclease H	STRAND	1
1055	T	S:68.8%,other:31.2%	Reverse transcriptase/ribonuclease H	STRAND	3
1056	L	L:90.6%	Reverse transcriptase/ribonuclease H	STRAND	3
1057	T	T:85.3%	Reverse transcriptase/ribonuclease H	STRAND	3
1058	D	D:23.5%,E:72.9%	Reverse transcriptase/ribonuclease H	STRAND	2
1060	T	T:99.4%	Reverse transcriptase/ribonuclease H		2
1061	N	N:99.4%	Reverse transcriptase/ribonuclease H	HELIX	1
1062	Q	Q:99.4%	Reverse transcriptase/ribonuclease H	HELIX	2
1063	K	K:93.5%	Reverse transcriptase/ribonuclease H	HELIX	3
1064	T	T:74.1%,A:24.7%	Reverse transcriptase/ribonuclease H	HELIX	1
1065	E	E:98.8%	Reverse transcriptase/ribonuclease H	HELIX	3
1067	Q	Q:57.6%,H:35.3%	Reverse transcriptase/ribonuclease H	HELIX	2
1069	I	I:96.5%	Reverse transcriptase/ribonuclease H	HELIX	2
1070	Y	H:31.2%,Y:28.2%,other:40.6%	Reverse transcriptase/ribonuclease H	HELIX	3
1072	A	A:98.8%	Reverse transcriptase/ribonuclease H	HELIX	1
1074	Q	Q:95.3%	Reverse transcriptase/ribonuclease H	HELIX	1
1075	D	D:95.9%	Reverse transcriptase/ribonuclease H	HELIX	2
1076	S	S:100.0%	Reverse transcriptase/ribonuclease H	HELIX	1
1077	G	G:92.4%	Reverse transcriptase/ribonuclease H		1
1078	L	S:57.1%,L:22.4%,other:20.6%	Reverse transcriptase/ribonuclease H	STRAND	1
1081	N	N:100.0%	Reverse transcriptase/ribonuclease H	STRAND	3
1082	I	I:96.5%	Reverse transcriptase/ribonuclease H	STRAND	1
1083	V	V:98.2%	Reverse transcriptase/ribonuclease H	STRAND	1
1084	T	T:98.8%	Reverse transcriptase/ribonuclease H	STRAND	1
1085	D	D:98.8%	Reverse transcriptase/ribonuclease H		4
1087	Q	Q:100.0%	Reverse transcriptase/ribonuclease H	HELIX	2
1088	Y	Y:99.4%	Reverse transcriptase/ribonuclease H	HELIX	11
1089	A	A:95.3%	Reverse transcriptase/ribonuclease H	HELIX	2
1090	L	L:96.5%	Reverse transcriptase/ribonuclease H	HELIX	1
1092	I	I:98.2%	Reverse transcriptase/ribonuclease H	HELIX	2
1093	I	I:98.2%	Reverse transcriptase/ribonuclease H	HELIX	1
1094	Q	Q:93.5%	Reverse transcriptase/ribonuclease H	HELIX	1
1095	A	A:94.1%	Reverse transcriptase/ribonuclease H	HELIX	2
1096	Q	Q:92.4%	Reverse transcriptase/ribonuclease H		5
1099	Q	K:64.1%,R:27.1%	Reverse transcriptase/ribonuclease H	STRAND	3
1100	S	S:100.0%	Reverse transcriptase/ribonuclease H	STRAND	1
1101	E	E:94.1%	Reverse transcriptase/ribonuclease H	STRAND	1
1102	S	S:100.0%	Reverse transcriptase/ribonuclease H		2
1103	E	E:90.0%	Reverse transcriptase/ribonuclease H	HELIX	1
1104	L	L:74.7%,other:25.3%	Reverse transcriptase/ribonuclease H	HELIX	2
1105	V	V:100.0%	Reverse transcriptase/ribonuclease H	HELIX	2
1106	N	N:78.2%,other:21.8%	Reverse transcriptase/ribonuclease H	HELIX	3
1110	E	E:98.2%	Reverse transcriptase/ribonuclease H	HELIX	1
1111	Q	Q:57.6%,E:21.8%,other:20.6%	Reverse transcriptase/ribonuclease H	HELIX	2
1114	K	K:60.6%,other:39.4%	Reverse transcriptase/ribonuclease H	HELIX	3
1115	K	K:98.2%	Reverse transcriptase/ribonuclease H		2
1116	E	E:82.4%	Reverse transcriptase/ribonuclease H	STRAND	2
1117	K	K:69.4%,R:27.1%	Reverse transcriptase/ribonuclease H	STRAND	1
1120	L	L:98.2%	Reverse transcriptase/ribonuclease H	STRAND	1
1121	A	S:79.4%,other:20.6%	Reverse transcriptase/ribonuclease H	STRAND	3
1122	W	W:99.4%	Reverse transcriptase/ribonuclease H	STRAND	1
1124	P	P:99.4%	Reverse transcriptase/ribonuclease H		2
1126	H	H:100.0%	Reverse transcriptase/ribonuclease H		6
1129	I	I:99.4%	Reverse transcriptase/ribonuclease H		1
1134	Q	Q:95.9%	Reverse transcriptase/ribonuclease H	HELIX	2
1135	V	V:92.4%	Reverse transcriptase/ribonuclease H	HELIX	1
1136	D	D:98.2%	Reverse transcriptase/ribonuclease H	HELIX	4
1141	A	S:48.2%,A:20.6%,other:31.2%	Reverse transcriptase/ribonuclease H		1
1142	G	G:97.1%	Reverse transcriptase/ribonuclease H		2
1143	I	I:96.5%	Reverse transcriptase/ribonuclease H		2
1144	R	R:99.4%	Reverse transcriptase/ribonuclease H		1
1145	K	K:90.0%	Reverse transcriptase/ribonuclease H		1
1146	V	V:82.4%	Reverse transcriptase/ribonuclease H		1
1148	F	F:100.0%	Gag-Pol polyprotein		3
1149	L	L:99.4%	Gag-Pol polyprotein		2
1150	D	D:96.5%	Gag-Pol polyprotein		4
1151	G	G:100.0%	Gag-Pol polyprotein		1
1152	I	I:100.0%	Gag-Pol polyprotein		2
1153	D	D:94.1%	Gag-Pol polyprotein		3
1154	K	K:95.9%	Gag-Pol polyprotein		2
1155	A	A:99.4%	Gag-Pol polyprotein		1
1156	Q	Q:99.4%	Gag-Pol polyprotein		1
1157	D	E:92.9%	Gag-Pol polyprotein		3
1158	E	D:24.1%,E:74.1%	Gag-Pol polyprotein		2
1159	H	H:99.4%	Gag-Pol polyprotein		6
1160	E	E:94.7%	Gag-Pol polyprotein		4
1161	K	K:56.5%,R:42.9%	Gag-Pol polyprotein		3
1162	Y	Y:100.0%	Gag-Pol polyprotein		4
1163	H	H:98.8%	Gag-Pol polyprotein		7
1164	S	S:71.8%,N:25.9%	Gag-Pol polyprotein		2
1165	N	N:100.0%	Gag-Pol polyprotein		3
1167	R	R:90.6%	Gag-Pol polyprotein		1
1168	A	A:89.4%	Gag-Pol polyprotein		1
1169	M	M:95.9%	Gag-Pol polyprotein		1
1170	A	A:97.1%	Gag-Pol polyprotein		1
1171	S	S:85.9%	Gag-Pol polyprotein		3
1172	D	D:92.4%	Gag-Pol polyprotein		2
1175	L	L:92.9%	Gag-Pol polyprotein		1
1176	P	P:100.0%	Gag-Pol polyprotein		2
1177	P	P:96.5%	Gag-Pol polyprotein		1
1178	V	I:50.0%,V:49.4%	Gag-Pol polyprotein		2
1179	V	V:95.3%	Gag-Pol polyprotein		2
1180	A	A:98.8%	Gag-Pol polyprotein		1
1181	K	K:98.2%	Gag-Pol polyprotein		3
1182	E	E:98.8%	Gag-Pol polyprotein		3
1184	V	V:93.5%	Gag-Pol polyprotein		2
1185	A	A:98.8%	Gag-Pol polyprotein		1
1186	S	S:81.2%	Gag-Pol polyprotein		3
1187	C	C:100.0%	Gag-Pol polyprotein		3
1188	D	D:92.4%	Gag-Pol polyprotein		2
1189	K	K:97.1%	Gag-Pol polyprotein		5
1190	C	C:99.4%	Gag-Pol polyprotein		3
1191	Q	Q:95.9%	Gag-Pol polyprotein		2
1192	L	L:86.5%	Gag-Pol polyprotein		3
1193	K	K:99.4%	Gag-Pol polyprotein		5
1194	G	G:100.0%	Gag-Pol polyprotein		2
1195	E	E:99.4%	Gag-Pol polyprotein		2
1196	A	A:99.4%	Gag-Pol polyprotein		3
1197	M	M:75.9%,other:24.1%	Gag-Pol polyprotein		3
1198	H	H:100.0%	Gag-Pol polyprotein		7
1199	G	G:100.0%	Gag-Pol polyprotein		2
1200	Q	Q:100.0%	Gag-Pol polyprotein		6
1201	V	V:97.6%	Gag-Pol polyprotein		3
1202	D	D:96.5%	Gag-Pol polyprotein		6
1203	C	C:98.8%	Gag-Pol polyprotein		2
1204	S	S:98.2%	Gag-Pol polyprotein	HELIX	2
1206	G	G:97.1%	Gag-Pol polyprotein	HELIX	3
1207	I	I:92.4%	Gag-Pol polyprotein	STRAND	1
1208	W	W:100.0%	Gag-Pol polyprotein	STRAND	7
1209	Q	Q:99.4%	Gag-Pol polyprotein	STRAND	6
1210	L	L:92.9%	Gag-Pol polyprotein	STRAND	5
1211	D	D:99.4%	Gag-Pol polyprotein	STRAND	8
1212	C	C:100.0%	Gag-Pol polyprotein	STRAND	6
1213	T	T:99.4%	Gag-Pol polyprotein	STRAND	7
1214	H	H:100.0%	Gag-Pol polyprotein	STRAND	5
1215	L	L:97.6%	Gag-Pol polyprotein	STRAND	4
1216	E	E:99.4%	Gag-Pol polyprotein		4
1217	G	G:100.0%	Gag-Pol polyprotein		3
1218	K	K:98.2%	Gag-Pol polyprotein	STRAND	5
1219	V	I:50.6%,V:46.5%	Gag-Pol polyprotein	STRAND	5
1220	I	I:100.0%	Gag-Pol polyprotein	STRAND	1
1221	L	L:84.1%	Gag-Pol polyprotein	STRAND	5
1222	V	V:99.4%	Gag-Pol polyprotein	STRAND	6
1223	A	A:99.4%	Gag-Pol polyprotein	STRAND	3
1224	V	V:99.4%	Gag-Pol polyprotein	STRAND	4
1225	H	H:100.0%	Gag-Pol polyprotein	STRAND	2
1226	V	V:98.8%	Gag-Pol polyprotein	TURN	3
1227	A	A:98.8%	Gag-Pol polyprotein	TURN	1
1228	S	S:100.0%	Gag-Pol polyprotein	TURN	5
1229	G	G:98.2%	Gag-Pol polyprotein		1
1230	Y	Y:96.5%	Gag-Pol polyprotein		2
1231	I	I:82.4%	Gag-Pol polyprotein	STRAND	2
1232	E	E:99.4%	Gag-Pol polyprotein	STRAND	5
1233	A	A:98.8%	Gag-Pol polyprotein	STRAND	3
1234	E	E:100.0%	Gag-Pol polyprotein	STRAND	5
1235	V	V:100.0%	Gag-Pol polyprotein	STRAND	1
1237	P	P:98.2%	Gag-Pol polyprotein	STRAND	2
1238	A	A:95.3%	Gag-Pol polyprotein	STRAND	3
1239	E	E:99.4%	Gag-Pol polyprotein	STRAND	8
1240	T	T:100.0%	Gag-Pol polyprotein	STRAND	1
1242	Q	Q:98.2%	Gag-Pol polyprotein	HELIX	6
1243	E	E:93.5%	Gag-Pol polyprotein	HELIX	1
1244	T	T:97.1%	Gag-Pol polyprotein	HELIX	4
1245	A	A:98.8%	Gag-Pol polyprotein	HELIX	2
1246	Y	Y:98.2%	Gag-Pol polyprotein	HELIX	3
1248	L	I:62.9%,L:34.1%	Gag-Pol polyprotein	HELIX	2
1249	L	L:100.0%	Gag-Pol polyprotein	HELIX	3
1250	K	K:99.4%	Gag-Pol polyprotein	HELIX	6
1251	L	L:99.4%	Gag-Pol polyprotein	HELIX	2
1253	G	G:93.5%	Gag-Pol polyprotein	HELIX	2
1254	R	R:99.4%	Gag-Pol polyprotein	HELIX	4
1255	W	W:100.0%	Gag-Pol polyprotein		4
1256	P	P:100.0%	Gag-Pol polyprotein		5
1258	K	K:92.9%	Gag-Pol polyprotein		4
1259	T	V:62.4%,other:37.6%	Gag-Pol polyprotein	STRAND	5
1260	I	I:87.1%	Gag-Pol polyprotein	STRAND	1
1261	H	H:100.0%	Gag-Pol polyprotein	STRAND	4
1262	T	T:99.4%	Gag-Pol polyprotein		4
1263	D	D:98.8%	Gag-Pol polyprotein		9
1264	N	N:99.4%	Gag-Pol polyprotein		5
1265	G	G:100.0%	Gag-Pol polyprotein		7
1266	S	S:61.2%,P:29.4%	Gag-Pol polyprotein	HELIX	7
1267	N	N:100.0%	Gag-Pol polyprotein	HELIX	7
1268	F	F:99.4%	Gag-Pol polyprotein	HELIX	6
1269	T	T:84.7%	Gag-Pol polyprotein		1
1270	G	S:98.2%	Gag-Pol polyprotein		3
1271	A	A:73.5%,other:26.5%	Gag-Pol polyprotein	HELIX	4
1272	T	A:72.9%,other:27.1%	Gag-Pol polyprotein	HELIX	6
1273	V	V:93.5%	Gag-Pol polyprotein	HELIX	3
1274	R	K:95.9%	Gag-Pol polyprotein	HELIX	1
1275	A	A:100.0%	Gag-Pol polyprotein	HELIX	5
1276	A	A:99.4%	Gag-Pol polyprotein	HELIX	3
1277	C	C:99.4%	Gag-Pol polyprotein	HELIX	5
1278	W	W:99.4%	Gag-Pol polyprotein	HELIX	7
1279	W	W:99.4%	Gag-Pol polyprotein	HELIX	8
1281	G	G:51.2%,N:31.2%	Gag-Pol polyprotein		1
1282	I	I:80.0%	Gag-Pol polyprotein		5
1283	K	Q:44.7%,K:27.6%,T:20.6%	Gag-Pol polyprotein		7
1284	Q	Q:95.9%	Gag-Pol polyprotein		1
1285	E	E:99.4%	Gag-Pol polyprotein		5
1286	F	F:98.8%	Gag-Pol polyprotein		3
1287	G	G:98.8%	Gag-Pol polyprotein		6
1288	I	I:97.6%	Gag-Pol polyprotein		1
1289	P	P:98.8%	Gag-Pol polyprotein		3
1290	Y	Y:100.0%	Gag-Pol polyprotein		10
1291	N	N:99.4%	Gag-Pol polyprotein		5
1292	P	P:100.0%	Gag-Pol polyprotein		4
1293	Q	Q:100.0%	Gag-Pol polyprotein		8
1294	S	S:100.0%	Gag-Pol polyprotein		6
1295	Q	Q:99.4%	Gag-Pol polyprotein		9
1296	G	G:100.0%	Gag-Pol polyprotein		4
1297	V	V:98.8%	Gag-Pol polyprotein		2
1298	V	V:96.5%	Gag-Pol polyprotein		6
1299	E	E:100.0%	Gag-Pol polyprotein		11
1300	S	S:97.6%	Gag-Pol polyprotein		7
1301	M	M:97.1%	Gag-Pol polyprotein		4
1302	N	N:99.4%	Gag-Pol polyprotein	HELIX	8
1303	K	K:97.6%	Gag-Pol polyprotein	HELIX	6
1304	E	E:97.1%	Gag-Pol polyprotein	HELIX	6
1305	L	L:100.0%	Gag-Pol polyprotein	HELIX	3
1306	K	K:100.0%	Gag-Pol polyprotein	HELIX	9
1307	K	K:96.5%	Gag-Pol polyprotein	HELIX	8
1308	I	I:98.8%	Gag-Pol polyprotein	HELIX	4
1309	I	I:100.0%	Gag-Pol polyprotein	HELIX	3
1310	G	G:86.5%	Gag-Pol polyprotein	HELIX	9
1311	Q	Q:99.4%	Gag-Pol polyprotein	HELIX	3
1312	V	V:88.2%	Gag-Pol polyprotein	HELIX	6
1313	R	R:98.8%	Gag-Pol polyprotein	HELIX	7
1314	D	D:77.1%,E:21.8%	Gag-Pol polyprotein	HELIX	5
1315	Q	Q:100.0%	Gag-Pol polyprotein	HELIX	3
1317	E	E:98.8%	Gag-Pol polyprotein		3
1318	H	H:97.1%	Gag-Pol polyprotein		3
1319	L	L:100.0%	Gag-Pol polyprotein	HELIX	5
1320	K	K:95.9%	Gag-Pol polyprotein	HELIX	2
1321	T	T:100.0%	Gag-Pol polyprotein	HELIX	2
1323	V	V:100.0%	Gag-Pol polyprotein	HELIX	2
1324	Q	Q:97.6%	Gag-Pol polyprotein	HELIX	2
1325	M	M:100.0%	Gag-Pol polyprotein	HELIX	3
1326	A	A:99.4%	Gag-Pol polyprotein	HELIX	3
1327	V	V:100.0%	Gag-Pol polyprotein	HELIX	2
1328	F	F:99.4%	Gag-Pol polyprotein	HELIX	5
1329	I	I:95.9%	Gag-Pol polyprotein	HELIX	2
1330	H	H:100.0%	Gag-Pol polyprotein	HELIX	1
1331	N	N:100.0%	Gag-Pol polyprotein	HELIX	3
1332	F	F:98.2%	Gag-Pol polyprotein	HELIX	10
1333	K	K:100.0%	Gag-Pol polyprotein		5
1334	R	R:100.0%	Gag-Pol polyprotein		2
1335	K	K:96.5%	Gag-Pol polyprotein	STRAND	6
1336	G	G:98.8%	Gag-Pol polyprotein	STRAND	1
1337	G	G:100.0%	Gag-Pol polyprotein	STRAND	1
1338	I	I:99.4%	Gag-Pol polyprotein	STRAND	3
1339	G	G:99.4%	Gag-Pol polyprotein	STRAND	1
1340	G	G:94.1%	Gag-Pol polyprotein		2
1341	Y	Y:98.8%	Gag-Pol polyprotein		1
1342	S	S:91.2%	Gag-Pol polyprotein		2
1343	A	A:98.8%	Gag-Pol polyprotein	HELIX	1
1344	G	G:99.4%	Gag-Pol polyprotein	HELIX	3
1345	E	E:98.8%	Gag-Pol polyprotein	HELIX	3
1346	R	R:98.2%	Gag-Pol polyprotein	HELIX	6
1347	I	I:98.8%	Gag-Pol polyprotein	HELIX	4
1348	V	I:85.3%	Gag-Pol polyprotein	HELIX	3
1349	D	D:100.0%	Gag-Pol polyprotein	HELIX	2
1350	I	I:95.3%	Gag-Pol polyprotein	HELIX	7
1351	I	I:96.5%	Gag-Pol polyprotein	HELIX	4
1352	A	A:87.1%	Gag-Pol polyprotein	HELIX	3
1353	T	S:30.6%,T:69.4%	Gag-Pol polyprotein	HELIX	2
1355	I	I:92.9%	Gag-Pol polyprotein	HELIX	1
1356	Q	Q:98.8%	Gag-Pol polyprotein		1
1357	T	T:98.2%	Gag-Pol polyprotein		2
1358	K	K:76.5%,other:23.5%	Gag-Pol polyprotein	HELIX	6
1359	E	E:97.1%	Gag-Pol polyprotein	HELIX	4
1360	L	L:98.2%	Gag-Pol polyprotein	HELIX	1
1361	Q	Q:99.4%	Gag-Pol polyprotein	HELIX	7
1362	K	K:91.8%	Gag-Pol polyprotein	HELIX	4
1363	Q	Q:98.2%	Gag-Pol polyprotein	HELIX	2
1365	T	I:27.1%,T:58.2%	Gag-Pol polyprotein	HELIX	3
1366	K	K:94.1%	Gag-Pol polyprotein	HELIX	6
1367	I	I:94.7%	Gag-Pol polyprotein	HELIX	3
1368	Q	Q:96.5%	Gag-Pol polyprotein	HELIX	6
1369	N	N:89.4%	Gag-Pol polyprotein		6
1370	F	F:98.2%	Gag-Pol polyprotein	STRAND	7
1371	R	R:97.6%	Gag-Pol polyprotein	STRAND	4
1373	Y	Y:98.8%	Gag-Pol polyprotein	STRAND	4
1374	Y	Y:92.4%	Gag-Pol polyprotein	STRAND	3
1375	R	R:99.4%	Gag-Pol polyprotein		5
1376	D	D:100.0%	Gag-Pol polyprotein		7
1377	S	S:99.4%	Gag-Pol polyprotein		6
1378	R	R:98.8%	Gag-Pol polyprotein		4
1379	N	D:93.5%	Gag-Pol polyprotein		1
1380	P	P:98.8%	Gag-Pol polyprotein		1
1381	L	I:69.4%,V:20.6%	Gag-Pol polyprotein		4
1382	W	W:100.0%	Gag-Pol polyprotein		4
1383	K	K:100.0%	Gag-Pol polyprotein	STRAND	5
1386	A	A:100.0%	Gag-Pol polyprotein	STRAND	1
1387	K	K:95.9%	Gag-Pol polyprotein	STRAND	2
1388	L	L:98.8%	Gag-Pol polyprotein	STRAND	1
1389	L	L:99.4%	Gag-Pol polyprotein	STRAND	3
1390	W	W:100.0%	Gag-Pol polyprotein	STRAND	3
1391	K	K:99.4%	Gag-Pol polyprotein	STRAND	4
1393	E	E:100.0%	Gag-Pol polyprotein	STRAND	4
1394	G	G:100.0%	Gag-Pol polyprotein	STRAND	3
1395	A	A:100.0%	Gag-Pol polyprotein	STRAND	2
1396	V	V:100.0%	Gag-Pol polyprotein	STRAND	2
1397	V	V:100.0%	Gag-Pol polyprotein	STRAND	2
1398	I	I:97.1%	Gag-Pol polyprotein	STRAND	2
1399	Q	Q:98.8%	Gag-Pol polyprotein	STRAND	2
1400	D	D:97.1%	Gag-Pol polyprotein		4
1401	N	N:90.6%	Gag-Pol polyprotein		5
1402	S	S:81.2%	Gag-Pol polyprotein		1
1403	D	D:54.7%,E:45.3%	Gag-Pol polyprotein		3
1404	I	I:99.4%	Gag-Pol polyprotein	STRAND	1
1405	K	K:100.0%	Gag-Pol polyprotein	STRAND	5
1406	V	V:98.8%	Gag-Pol polyprotein	STRAND	1
1407	V	V:98.2%	Gag-Pol polyprotein	STRAND	3
1408	P	P:100.0%	Gag-Pol polyprotein	STRAND	3
1409	R	R:100.0%	Gag-Pol polyprotein	HELIX	9
1410	R	R:98.8%	Gag-Pol polyprotein	HELIX	7
1411	K	K:98.2%	Gag-Pol polyprotein	HELIX	6
1412	A	A:88.2%	Gag-Pol polyprotein	STRAND	1
1413	K	K:99.4%	Gag-Pol polyprotein	STRAND	4
1414	I	I:100.0%	Gag-Pol polyprotein	STRAND	1
1415	I	I:97.6%	Gag-Pol polyprotein		2
1416	R	R:87.1%	Gag-Pol polyprotein		5
1417	D	D:89.4%	Gag-Pol polyprotein		2
1420	K	K:99.4%	Gag-Pol polyprotein		4
1422	M	M:98.2%	Gag-Pol polyprotein		1
1425	D	D:81.8%	Gag-Pol polyprotein		1
1426	D	D:97.1%	Gag-Pol polyprotein		2
1427	C	C:95.9%	Gag-Pol polyprotein		2
1428	V	V:91.2%	Gag-Pol polyprotein		3
1429	A	A:100.0%	Gag-Pol polyprotein		1
1430	S	S:21.2%,G:77.6%	Gag-Pol polyprotein		2
1431	R	R:95.9%	Gag-Pol polyprotein		3
1433	D	D:94.1%	Gag-Pol polyprotein		1
1435	D	D:91.2%	Gag-Pol polyprotein		1

Click on row for detailed mutagenesis information for a residue. All data is mapped to the HXB2 isolate.

Citation : Davey NE*, Satagopam VP*, Santiago-Mozos S*, Villacorta-Martin C, Bharat TA, Schneider R, Briggs JA.
The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data.
PLoS Comput Biol. 2014 Dec 4;10(12):e1003951. [PubMed | PLoS ]

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